Browse Element(s) Details


OsAffx.7244.1.S1_at

Description tigr:9639.m02645
TID=OsAffx.7244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2925011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein
LOC_Os11g29260NANA11+16468056..16468469hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_x_at5/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_x_at4/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_at3/1111+16469884..16472537hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7244.1.S1_at--89--851Chr11:16457601..16457625 (25 bp)
ATGGCAACGACGATTGTGGCGACAA
LOC_Os11g29250
OsAffx.7244.1.S1_at--440--5771Chr11:16457593..16457617 (25 bp)
GACGATTGTGGCGACAACAACGATG
LOC_Os11g29250
OsAffx.7244.1.S1_at--631--8151Chr11:16456318..16456342 (25 bp)
GGAAATCTTGCTAGATGCCCTCATT
LOC_Os11g29250
OsAffx.7244.1.S1_at--1150--10711Chr11:16456311..16456335 (25 bp)
TTGCTAGATGCCCTCATTGGTGCCC
LOC_Os11g29250
OsAffx.7244.1.S1_at--393--31Chr11:16456296..16456320 (25 bp)
ATTGGTGCCCCTCAGGCCAGATTTT
LOC_Os11g29250
OsAffx.7244.1.S1_at--761--10391Chr11:16456275..16456299 (25 bp)
TTTTGTCCAAGAGGAGGTGGTACCA
LOC_Os11g29250
OsAffx.7244.1.S1_at--42--6151Chr11:16456262..16456286 (25 bp)
GAGGTGGTACCAATAGCAAGAGATA
LOC_Os11g29250
OsAffx.7244.1.S1_at--871--6471Chr11:16456241..16456265 (25 bp)
GATACTTATGGTGCATGTCTCTCAA
LOC_Os11g29250
OsAffx.7244.1.S1_at--214--771Chr11:16456227..16456251 (25 bp)
ATGTCTCTCAATCTTGCGTGTTGCG
LOC_Os11g29250
OsAffx.7244.1.S1_at--232--4671Chr11:16456212..16456236 (25 bp)
GCGTGTTGCGAGAATACTTTCTTCT
LOC_Os11g29250
OsAffx.7244.1.S1_at--952--9871Chr11:16456198..16456222 (25 bp)
TACTTTCTTCTTGACCCTATTGGAG
LOC_Os11g29250
Target Sequence 
ATGGCAACGACGATTGTGGCGACAACAACGATGGCGGCTGGGGTGGATGGGATGCTATGGAAATCTTGCTAGATGCCCTC
ATTGGTGCCCCTCAGGCCAGATTTTGTCCAAGAGGAGGTGGTACCAATAGCAAGAGATACTTATGGTGCATGTCTCTCAA
TCTTGCGTGTTGCGAGAATACTTTCTTCTTGACCCTATTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis