Browse Element(s) Details


Os.53967.1.S1_at

Description gb:AK101075.1
DB_XREF= gi:32986284
TID=Os.53967.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024B08, full insert sequence.
FL= gb:AK101075.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2924010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein
LOC_Os11g29260NANA11+16468056..16468469hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_x_at5/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_x_at4/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.7245.1.S1_at3/1111+16469884..16472537hypothetical protein
LOC_Os11g29274OsAffx.2609.2.S1_at3/1111+16469884..16472537hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53967.1.S1_at--857--9351Chr11:16449139..16449163 (25 bp)
TCGCAGCTGGTGGTCTTCTGTCAAT
LOC_Os11g29240
Os.53967.1.S1_at--457--2031NONE
ACTACCGTTCTGTACTCAGGGTCAA
NONE
Os.53967.1.S1_at--1136--5011Chr11:16449001..16449025 (25 bp)
GCAGTGGCTGTTTTTTAGCCGTTCA
LOC_Os11g29240
Os.53967.1.S1_at--306--2111Chr11:16448972..16448996 (25 bp)
ACATGTTTTGGCTCATCAGTGACAT
LOC_Os11g29240
Os.53967.1.S1_at--951--7111Chr11:16448935..16448959 (25 bp)
GTCAGTTCTACTGTCCTGTATGCTT
LOC_Os11g29240
Os.53967.1.S1_at--415--3111Chr11:16448809..16448833 (25 bp)
AATATCAACAAGCTGCAGTGCGGCA
LOC_Os11g29240
Os.53967.1.S1_at--1121--1591Chr11:16448781..16448805 (25 bp)
AGCTGCCAACAGTGAGGATCATTTC
LOC_Os11g29240
Os.53967.1.S1_at--476--2772Chr11:16448683..16448707 (25 bp)
AAGAGCCTGCCCGACAGAGGAAGAA
LOC_Os11g29240
Os.53967.1.S1_at--758--3011Chr11:16448648..16448672 (25 bp)
AATGCTAGGGATGCTTGCACTCAGG
LOC_Os11g29240
Os.53967.1.S1_at--830--6931Chr11:16448621..16448645 (25 bp)
GTAGTCACTAAAAAGGCACCCACTG
LOC_Os11g29240
Os.53967.1.S1_at--591--3351Chr11:16448606..16448629 (24 bp)
CACCCACTGTTCATAACTCTGATGT
LOC_Os11g29240
Target Sequence 
TCGCAGCTGGTGGTCTTCTGTCAATGGCTGAAAAACTACCGTTCTGTACTCAGGGTCAATATGCTAATGGTACTGTTGAG
GGCTTGTCAGAACAAGAGTTGTGCATAAAATGTGGCAAAGATGGTCAGTTGCTGAAATGCAGTGGCTGTTTTTTAGCCGT
TCATGATACATGTTTTGGCTCATCAGTGACATTTGATGATTCTGGTCAGTTCTACTGTCCTGTATGCTTCTATACTAAAG
CAACTGAAGCATATCAAAAGGCAAAGAAAACATATTCTGAAGCAAGGAAGAACCTATCAGCTTTCCTTGGTAGAAAGCAA
TTGGCTGAGCAATATCAACAAGCTGCAGTGCGGCAAAGAGCTGCCAACAGTGAGGATCATTTCAATGGGTGTAACAACGC
AATCAAAAGGCAAGGTAATCATCAATCTGAAGGAAATAACCTTTCTCATAGGGATGAAGAGCCTGCCCGACAGAGGAAGA
AGCAGAAGACAAATGCTAGGGATGCTTGCACTCAGGAAGTAGTCACTAAAAAGGCACCCACTGTTCATAACTCTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis