Browse Element(s) Details


Os.18823.1.S1_at

Description gb:AK058672.1
DB_XREF= gi:32968690
TID=Os.18823.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full insert sequence.
FL= gb:AK058672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2920011/11Protein transport protein Sec24-like CEF, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29160NANA11+16402859..16404366hypothetical protein
LOC_Os11g29170NANA11+16407053..16408821retrotransposon protein, putative, unclassified
LOC_Os11g29180NANA11+16412969..16413754retrotransposon protein, putative, unclassified
LOC_Os11g29190Os.7926.1.S1_at11/1111+16415978..1641805640S ribosomal protein S5, putative, expressed
LOC_Os11g29200Os.18823.1.S1_at11/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200OsAffx.8676.1.S1_at4/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29200Os.13521.1.S1_at2/1111+16424083..16435406Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os11g29210OsAffx.7243.1.S1_s_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210OsAffx.7243.1.S1_at11/1111+16435807..16437652expressed protein
LOC_Os11g29210Os.20242.1.S1_at10/1111+16435807..16437652expressed protein
LOC_Os11g29220OsAffx.31198.1.S1_at11/1111+16439574..16439957hypothetical protein
LOC_Os11g29230Os.51222.1.S1_at11/1111+16441796..16444996PPR986-12, putative, expressed
LOC_Os11g29240Os.53967.1.S1_at10/1111+16448568..16452099expressed protein
LOC_Os11g29250OsAffx.7244.1.S1_at11/1111+16455940..16457656hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006979biological_processresponse to oxidative stress
GO:0016192biological_processvesicle-mediated transport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18823.1.S1_at--745--6531Chr11:16434849..16434873 (25 bp)
GATTTCTTCCGCTCATTTTTGACAG
LOC_Os11g29200
Os.18823.1.S1_at--230--10271Chr11:16434866..16434890 (25 bp)
TTTGACAGAGGACAAGGCACCTGGT
LOC_Os11g29200
Os.18823.1.S1_at--512--1771Chr11:16434884..16434908 (25 bp)
ACCTGGTGGCCTTTCCTATGTGGAG
LOC_Os11g29200
Os.18823.1.S1_at--887--791Chr11:16434901..16434925 (25 bp)
ATGTGGAGTTCCTTGTGCATGTGCA
LOC_Os11g29200
Os.18823.1.S1_at--137--7331Chr11:16434915..16434939 (25 bp)
GTGCATGTGCACAGGCAAATCCAGA
LOC_Os11g29200
Os.18823.1.S1_at--1135--671Chr11:16434945..16434969 (25 bp)
ATGACGTGACATGCCATATGCTTGT
LOC_Os11g29200
Os.18823.1.S1_at--62--9071Chr11:16434963..16434987 (25 bp)
TGCTTGTCGCACTGTTTTTGGTTAG
LOC_Os11g29200
Os.18823.1.S1_at--278--2791Chr11:16435008..16435032 (25 bp)
AAGAGATCAGTTTCGGCACAAGGAT
LOC_Os11g29200
Os.18823.1.S1_at--1115--4931Chr11:16435044..16435068 (25 bp)
GCATAGGGCAACTCCAGATCACTGG
LOC_Os11g29200
Os.18823.1.S1_at--758--871Chr11:16435120..16435144 (25 bp)
AGGCCTGCAATGTTTACAGCATAGT
LOC_Os11g29200
Os.18823.1.S1_at--700--7331Chr11:16435223..16435247 (25 bp)
GTGCATCCTTATTGAAATCTCTTGT
LOC_Os11g29200
Target Sequence 
GATTTCTTCCGCTCATTTTTGACAGAGGACAAGGCACCTGGTGGCCTTTCCTATGTGGAGTTCCTTGTGCATGTGCACAG
GCAAATCCAGAGCAAGATGACGTGACATGCCATATGCTTGTCGCACTGTTTTTGGTTAGTGGATGGATTACAAACTAAGA
AGAGATCAGTTTCGGCACAAGGATACTGCGAAGAAGCATAGGGCAACTCCAGATCACTGGTTGAGTTGGGGTTAGANATN
NCATTTTCCTGGAGAATAGATTTGCAGGAATTGAGGCCTGCAATGTTTACAGCATAGTTTTTTTNGGGGGAGNGGGTGGT
ATATCTTGTAAACAGATGAGTTGTTGGATGTGATGCCTCTTTTTTTTGTTTCTCACCGTGCATCCTTATTGAAATCTCTT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis