Browse Element(s) Details


Os.11937.1.S1_at

Description gb:AK065321.1
DB_XREF= gi:32975339
TID=Os.11937.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.11937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P15, full insert sequence.
FL= gb:AK065321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2937011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11937.1.S1_at--117--2091Chr11:16534980..16535004 (25 bp)
ACATATACTCAAGTGGCAGCCGGGA
LOC_Os11g29370
Os.11937.1.S1_at--544--4251Chr11:16534961..16534985 (25 bp)
CCGGGAGGCGCAAAGGCTATTATTT
LOC_Os11g29370
Os.11937.1.S1_at--1160--3171Chr11:16534934..16534958 (25 bp)
CAATACGGCCTATGGTGATCTGCGA
LOC_Os11g29370
Os.11937.1.S1_at--30--7411Chr11:16534920..16534944 (25 bp)
GTGATCTGCGACAATACCTCTGTGG
LOC_Os11g29370
Os.11937.1.S1_at--425--311Chr11:16534907..16534931 (25 bp)
ATACCTCTGTGGTTTCTTTGACACC
LOC_Os11g29370
Os.11937.1.S1_at--766--8131Chr11:16534738..16534762 (25 bp)
GGACAGTCCTGCTCAGATCTTATTT
LOC_Os11g29370
Os.11937.1.S1_at--593--10351Chr11:16534716..16534740 (25 bp)
TTTATCACCGATGTCTTCCAAGAAG
LOC_Os11g29370
Os.11937.1.S1_at--282--8651Chr11:16534475..16534499 (25 bp)
TGAGGTAATAATCTCCATTCGCCCG
LOC_Os11g29370
Os.11937.1.S1_at--716--4791Chr11:16534439..16534463 (25 bp)
GCTCCCTGAGAATCATGGTTTCCGG
LOC_Os11g29370
Os.11937.1.S1_at--410--6651Chr11:16534255..16534279 (25 bp)
GTTGCATTATTGTGCCATCCGTCGA
LOC_Os11g29370
Os.11937.1.S1_at--434--551Chr11:16534239..16534263 (25 bp)
ATCCGTCGACGGTTTTGTAGCTCTT
LOC_Os11g29370
Target Sequence 
ACATATACTCAAGTGGCAGCCGGGAGGCGCAAAGGCTATTATTTGGCAATACGGCCTATGGTGATCTGCGACAATACCTC
TGTGGTTTCTTTGACACCACAACCGGTAACAAAAGAGAAACAAGGAGCTACTTTGAGATTTCGCAATCACTTGGGGTGGA
CAGTCCTGCTCAGATCTTATTTATCACCGATGTCTTCCAAGAAGCTGTTGCTGCAAAAAGTGCAGGTTTTGAGGTAATAA
TCTCCATTCGCCCGGGAAATGCACCGCTCCCTGAGAATCATGGTTTCCGGACTATCAAGTCGTTTAGTGAGATCTGAAGA
AGGTACGCAAAGACAATGTCAGGAGTGCTTTGATGGCGAGCTACCTAGCATATGTAAGAACAATGCAAATAATAAATGGA
AAATCCGGAATGGTGGCAAAATAAATAAATTTGTAAATGTGGGCATATTGTTGCATTATTGTGCCATCCGTCGACGGTTT
TGTAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis