Browse Element(s) Details


Os.15877.1.S1_at

Description gb:AY278362.2
DB_XREF= gi:38426300
GEN=6PGDH2
TID=Os.15877.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15877 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) cytosolic 6-phosphogluconate dehydrogenase (6PGDH2) mRNA, complete cds.
PROD=cytosolic 6-phosphogluconate dehydrogenase
FL= gb:AY278362.2 gb:AK071592.1 gb:AK059546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2940011/116-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
LOC_Os11g29400Os.15877.1.S1_at11/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29400OsAffx.3069.1.S1_at1/1111+16561667..165635566-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os11g29410OsAffx.19067.1.S1_at9/1111+16572053..16576363hypothetical protein
LOC_Os11g29410OsAffx.21120.1.S1_x_at1/1111+16572053..16576363hypothetical protein
LOC_Os11g29420OsAffx.19068.1.S1_x_at11/1111+16577495..16578663Protease inhibitor/seed storage/LTP family protein
LOC_Os11g29430OsAffx.31200.1.S1_at10/1111+16585193..16586282hypothetical protein
LOC_Os11g29440NANA11+16587250..16588695retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15877.1.S1_at--447--7391Chr11:16562788..16562812 (25 bp)
GTGAGGCAAGCTCTGTATGCGTCAA
LOC_Os11g29400
Os.15877.1.S1_at--8--7671Chr11:16562833..16562857 (25 bp)
GGGATGAACCTTCTGCGAGCAAAGA
LOC_Os11g29400
Os.15877.1.S1_at--1122--7511Chr11:16562871..16562895 (25 bp)
GTGGAATCTTAACCTCGCAGAGCTT
LOC_Os11g29400
Os.15877.1.S1_at--806--3571Chr11:16562919..16562943 (25 bp)
CATTATCCGGGCGAAGTTTCTTGAT
LOC_Os11g29400
Os.15877.1.S1_at--1015--931Chr11:16562965..16562989 (25 bp)
AGGAACCCTGAGCTGGCCAATCTGA
LOC_Os11g29400
Os.15877.1.S1_at--560--3471Chr11:16563083..16563107 (25 bp)
CAGGGATGTCTGCTAGCCTTTCATA
LOC_Os11g29400
Os.15877.1.S1_at--187--4451Chr11:16563098..16563122 (25 bp)
GCCTTTCATACTTTGACACCTACAG
LOC_Os11g29400
Os.15877.1.S1_at--669--9871Chr11:16563118..16563142 (25 bp)
TACAGGTGTAGTCGGCTGCCTGCAA
LOC_Os11g29400
Os.15877.1.S1_at--11--4791Chr11:16563132..16563156 (25 bp)
GCTGCCTGCAAATCTGATCCAAGCA
LOC_Os11g29400
Os.15877.1.S1_at--504--10111Chr11:16563184..16563208 (25 bp)
TATGAGCGCATTGACCGTCCAGGTT
LOC_Os11g29400
Os.15877.1.S1_at--813--391Chr11:16563278..16563302 (25 bp)
ATCAGTAACTCTGTGTGGTGTCTCT
LOC_Os11g29400
Target Sequence 
GTGAGGCAAGCTCTGTATGCGTCAAAGATTTGCAGCTACGCGCAGGGGATGAACCTTCTGCGAGCAAAGAGTGTGGAGAA
GGGGTGGAATCTTAACCTCGCAGAGCTTGCAAGGATTTGGAAGGGCGGGTGCATTATCCGGGCGAAGTTTCTTGATAGGA
TCAAGAAGGCGTATGACAGGAACCCTGAGCTGGCCAATCTGATCGTGGACAGGGAGTTTGCAAGGGAGATGGTTCAGCGG
CAGAATGCATGGCGGTGGGTTGTGGCTCGTGCTGTGGAGGCTGGGATTAGCACTCCAGGGATGTCTGCTAGCCTTTCATA
CTTTGACACCTACAGGTGTAGTCGGCTGCCTGCAAATCTGATCCAAGCACAGAGAGACTTGTTTGGGGCACACACCTATG
AGCGCATTGACCGTCCAGGTTCNTTCCACACAGANTGGACTAAGCTGGCGAGAAAGAGNAATGGTGCGGCCATTTGAGGA
CTTGAATGGTATCAGTAACTCTGTGTGGTGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis