Browse Element(s) Details


Os.18463.1.S1_at

Description gb:AK107567.1
DB_XREF= gi:32992776
TID=Os.18463.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full insert sequence.
FL= gb:AK072009.1 gb:AK107567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3766011/11AER, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37620Os.46012.2.S1_x_at7/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.27088.1.A1_x_at4/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37620Os.46012.3.S1_x_at2/115+21932824..21937816retrotransposon protein, putative, unclassified
LOC_Os05g37630OsAffx.4547.1.S1_at11/115+21939850..21940554hypothetical protein
LOC_Os05g37640Os.51802.1.S1_at11/115+21947505..21948151expressed protein
LOC_Os05g37650OsAffx.30938.1.S1_at2/115+21955043..21955417hypothetical protein
LOC_Os05g37660Os.18463.1.S1_at11/115+21956892..21958778AER, putative, expressed
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18463.1.S1_at--365--6071Chr05:21957243..21957267 (25 bp)
GAGTTCTTGCAGTACGTGTCGCGTG
LOC_Os05g37660
Os.18463.1.S1_at--90--1791Chr05:21957217..21957241 (25 bp)
ACCGTGACGCACGTATTCTGGTGTG
LOC_Os05g37660
Os.18463.1.S1_at--673--5771Chr05:21957176..21957200 (25 bp)
GACGATCACGAGATGCGAGTTCCCC
LOC_Os05g37660
Os.18463.1.S1_at--812--4611Chr05:21957162..21957186 (25 bp)
GCGAGTTCCCCACATGACATGATTA
LOC_Os05g37660
Os.18463.1.S1_at--52--5671Chr05:21957147..21957171 (25 bp)
GACATGATTATCTCTCTGGTGGTGA
LOC_Os05g37660
Os.18463.1.S1_at--374--1191Chr05:21957112..21957136 (25 bp)
AGTAGCCGCTGGACACATACGTTGC
LOC_Os05g37660
Os.18463.1.S1_at--779--1191Chr05:21957039..21957063 (25 bp)
AGTATCCGTTACTCTTCTGGTATTC
LOC_Os05g37660
Os.18463.1.S1_at--290--91Chr05:21957018..21957042 (25 bp)
ATTCCATCCATTAAGCGGTTGGCCA
LOC_Os05g37660
Os.18463.1.S1_at--550--5491Chr05:21956988..21957012 (25 bp)
GAACAGCCGCACAGAGAGTTGCTTT
LOC_Os05g37660
Os.18463.1.S1_at--627--371Chr05:21956959..21956983 (25 bp)
ATCAAGTGGAGTCGTGCTCTGTTCC
LOC_Os05g37660
Os.18463.1.S1_at--660--10671Chr05:21956934..21956958 (25 bp)
TTCCTCCCTGTTAGAAGTACTTGTC
LOC_Os05g37660
Target Sequence 
GAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGA
TGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTG
CTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAG
CGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGT
TAGAAGTACTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis