Browse Element(s) Details


Os.18538.1.S1_at

Description gb:AK099867.1
DB_XREF= gi:32985076
TID=Os.18538.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18538 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0094H06.11 (OSJNBa0094H06.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E19, full insert sequence.
FL= gb:AK099867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3228011/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32250Os.46012.2.S1_x_at7/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32250Os.27088.1.A1_x_at5/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32250Os.46012.3.S1_x_at3/111+17994033..17999319retrotransposon protein, putative, unclassified
LOC_Os01g32270OsAffx.11282.1.S1_at11/111+18018728..18020523hypothetical protein
LOC_Os01g32280Os.18538.1.S1_at11/111+18023993..18033217integral membrane family protein, putative, expressed
LOC_Os01g32300Os.4868.1.S1_at11/111+18035674..18040300expressed protein
LOC_Os01g32310OsAffx.23472.1.S1_at11/111+18041014..18041487hypothetical protein
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18538.1.S1_at--1082--4671Chr01:18032671..18032695 (25 bp)
GCGGTTAATGCTGTATCTGTGCTAC
LOC_Os01g32280
Os.18538.1.S1_at--947--4671Chr01:18032704..18032728 (25 bp)
GCGGTTACAGCTTATGCGTGCATTC
LOC_Os01g32280
Os.18538.1.S1_at--41--4671Chr01:18032719..18032743 (25 bp)
GCGTGCATTCGCATCTTTTGAAGAT
LOC_Os01g32280
Os.18538.1.S1_at--499--131Chr01:18032858..18032882 (25 bp)
ATTCACTCAACGTTGTTCACTACTC
LOC_Os01g32280
Os.18538.1.S1_at--90--6631Chr01:18032901..18032925 (25 bp)
GTTGGTTGGTGCTACCGCAAGCTGA
LOC_Os01g32280
Os.18538.1.S1_at--272--2691Chr01:18032979..18033003 (25 bp)
AAGCTGGATAGTCCTGACTCCTGAA
LOC_Os01g32280
Os.18538.1.S1_at--309--5451Chr01:18033001..18033025 (25 bp)
GAACCCTATTTTCTGCTGAGCTAAG
LOC_Os01g32280
Os.18538.1.S1_at--1012--6611Chr01:18033058..18033082 (25 bp)
GTTGTTATTTCTGTACTGACCTAAG
LOC_Os01g32280
Os.18538.1.S1_at--66--3671Chr01:18033093..18033117 (25 bp)
CTTAGCTGTGTGAGTTTTTCCATAC
LOC_Os01g32280
Os.18538.1.S1_at--227--1611Chr01:18033140..18033164 (25 bp)
AGCTGCTGCTGATTTCCTTTGGAAA
LOC_Os01g32280
Os.18538.1.S1_at--728--7771Chr01:18033166..18033190 (25 bp)
GGTGCAAATCCTCCATTTTAATGAG
LOC_Os01g32280
Target Sequence 
GCGGTTAATGCTGTATCTGTGCTACTAACAACTGCGGTTACAGCTTATGCGTGCATTCGCATCTTTTGAAGATCTTTTTA
CTCAAGTTTCTTCCAAACACCCAATTCCATTCANAAGGTGTCAAGGCATGGCCCCAAGACAATGAAATGATGGATTAGGC
ATTTTGGCTGCTTGATGAGAAAGATTCAATTCACTCAACGTTGTTCACTACTCCAAGAAAAACATTGTTTGGTTGGTTGG
TGCTACCGCAAGCTGAAAAGTGTCAGTTGTCTAAGCATATACAGTTACCCTACTTAATGTGAAAGTGATAAGCTGGATAG
TCCTGACTCCTGAACCCTATTTTCTGCTGAGCTAAGGATTGTGGACTTTCGTCGTGTGGATGATGGCTGTTGTTATTTCT
GTACTGACCTAAGGATTTGTTGACTTAGCTGTGTGAGTTTTTCCATACAAAGCTGTTTGGGACAAAGGAAAGCTGCTGCT
GATTTCCTTTGGAAATGGTGCAAATCCTCCATTTTAATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis