Browse Element(s) Details


Os.18622.1.S1_at

Description gb:AK108145.1
DB_XREF= gi:32993354
TID=Os.18622.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-F03, full insert sequence.
FL= gb:AK108145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2044011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20410Os.53172.1.S1_at11/113+11525413..11527917aquaporin SIP2.1, putative, expressed
LOC_Os03g20420Os.10578.1.A1_at11/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20420Os.53962.1.S1_at1/113+11528342..11537173Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18622.1.S1_at--790--1831Chr03:11547645..11547669 (25 bp)
ACGCTGGACTCGTGGAACGTCATGT
LOC_Os03g20440
Os.18622.1.S1_at--11--3011Chr03:11547559..11547583 (25 bp)
AATGATGCATGCCATCGTGTGCCCT
LOC_Os03g20440
Os.18622.1.S1_at--170--9311Chr03:11547517..11547541 (25 bp)
TCCCATCGTCTGTTCGACGTAGAAT
LOC_Os03g20440
Os.18622.1.S1_at--639--5411Chr03:11547484..11547508 (25 bp)
GAAGCTGTACATTACTGCACGCAGT
LOC_Os03g20440
Os.18622.1.S1_at--415--4651Chr03:11547433..11547457 (25 bp)
GCGTCGGAGTGTGCTAGCTTAGCTA
LOC_Os03g20440
Os.18622.1.S1_at--994--6751Chr03:11547406..11547430 (25 bp)
GTAGCAAATTAGCAACCAGGTTCCC
LOC_Os03g20440
Os.18622.1.S1_at--229--3771Chr03:11547379..11547403 (25 bp)
CTCTCCTACCTTTCTTGTGATGGAT
LOC_Os03g20440
Os.18622.1.S1_at--512--6251Chr03:11547361..11547385 (25 bp)
GATGGATTCCTATAGTTGCACTTGC
LOC_Os03g20440
Os.18622.1.S1_at--1158--6651Chr03:11547347..11547371 (25 bp)
GTTGCACTTGCAGATGCGTCTCAAT
LOC_Os03g20440
Os.18622.1.S1_at--880--3191Chr03:11547326..11547350 (25 bp)
CAATGTCCCATTGATCCATTTTGCC
LOC_Os03g20440
Os.18622.1.S1_at--409--171Chr03:11547309..11547333 (25 bp)
ATTTTGCCCTTCAATCTCTGCTTTT
LOC_Os03g20440
Target Sequence 
ACGCTGGACTCGTGGAACGTCATGTACGGCAAGGACGAGGTTGTTTGAATTACCAAGGTAGGAGTACTACGTACTTGTAA
CTAATGAATGATGCATGCCATCGTGTGCCCTGCCCATCGATCGCTTGCTCCCATCGTCTGTTCGACGTAGAATTGTAGAG
AGAAGCTGTACATTACTGCACGCAGTGAGCCGTGTGTCCGTGGTGGCAGAGCGCGTCGGAGTGTGCTAGCTTAGCTAGTG
TAGCAAATTAGCAACCAGGTTCCCGGCTCTCCTACCTTTCTTGTGATGGATTCCTATAGTTGCACTTGCAGATGCGTCTC
AATGTCCCATTGATCCATTTTGCCCTTCAATCTCTGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis