Browse Element(s) Details


Os.18642.1.S1_x_at

Description gb:AK060133.1
DB_XREF= gi:32970151
TID=Os.18642.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C09, full insert sequence.
FL= gb:AK060133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1217011/11Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12130Os.28949.1.S1_at11/1112+6649801..6653129Leucine Rich Repeat family protein, expressed
LOC_Os12g12140NANA12+6656329..6656604hypothetical protein
LOC_Os12g12150NANA12+6660198..6663421transposon protein, putative, unclassified
LOC_Os12g12160NANA12+6664052..6670208transposon protein, putative, unclassified
LOC_Os12g12170Os.18642.1.S1_x_at11/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os12g12170Os.18642.2.S1_at9/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os12g12180OsAffx.19542.3.S1_x_at3/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12180OsAffx.21754.1.S1_x_at1/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12180OsAffx.9949.1.S1_at1/1112+6679990..6686756retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12190OsAffx.7561.1.S1_at11/1112+6688496..6691362hypothetical protein
LOC_Os12g12200Os.47463.1.S1_x_at6/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12200Os.14491.2.S1_x_at5/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18642.1.S1_x_at--375--2811Chr12:6677040..6677064 (25 bp)
AAGTTCTTGGAAGACCACCCTGGTG
LOC_Os12g12170
Os.18642.1.S1_x_at--1155--6011Chr12:6677065..6677089 (25 bp)
GAGAGGATGTTCTCCTGCATGCATC
LOC_Os12g12170
Os.18642.1.S1_x_at--567--2031Chr12:6678204..6678228 (25 bp)
ACTATGTGCCTCCTAGTGCATCAGA
LOC_Os12g12170
Os.18642.1.S1_x_at--502--9651Chr12:6678224..6678248 (25 bp)
TCAGAGGCTACAACCATTGGCGGCA
LOC_Os12g12170
Os.18642.1.S1_x_at--788--8871Chr12:6678250..6678274 (25 bp)
TGATGTGCCGCCAAACTTCAGAAGG
LOC_Os12g12170
Os.18642.1.S1_x_at--659--1451Chr12:6678282..6678306 (25 bp)
AGAAGAAAGGACCTCCTGCTCCCAA
LOC_Os12g12170
Os.18642.1.S1_x_at--9--10671Chr12:6678348..6678372 (25 bp)
TTGCCTTTGCCGCTTGGTACTACCT
LOC_Os12g12170
Os.18642.1.S1_x_at--1124--1731Chr12:6678374..6678398 (25 bp)
ACCTTCATTGCCAAGGCCTAGTAAA
LOC_Os12g12170
Os.18642.1.S1_x_at--611--2511Chr12:6678422..6678446 (25 bp)
AACATTTTACTATGCCACGTCTGCT
LOC_Os12g12170
Os.18642.1.S1_x_at--714--7171Chr12:6678440..6678464 (25 bp)
GTCTGCTTCAGCGACACATGGAGAT
LOC_Os12g12170
Os.18642.1.S1_x_at--995--3491Chr12:6678582..6678606 (25 bp)
CATGTAAATGGCGATGGCTGCATCA
LOC_Os12g12170
Target Sequence 
AAGTTCTTGGAAGACCACCCTGGTGGAGAGGATGTTCTCCTGCATGCATCTGCCTCTGGGGATGCCACGGAGGCATTTGA
AGATGTGGGGCACAGCACATCAGCCATCAGCATGATGAACAACTACTTGATTGGAAGCATCAAGGACTATGTGCCTCCTA
GTGCATCAGAGGCTACAACCATTGGCGGCAATGATGTGCCGCCAAACTTCAGAAGGATGCCACAGAAGAAAGGACCTCCT
GCTCCCAACACCTTTCTGGACTTCCTGCTCCCTCTGTTTGTGCTCGGCCTTGCCTTTGCCGCTTGGTACTACCTGNACCT
TCATTGCCAAGGCCTAGTAAATTTGGNTGAAGGNTTGAAGTATTGAACATTTTACTATGCCACGTCTGCTTCAGCGACAC
ATGGAGATATATTCTGGTCANGTTCTAAGTTTTATTATGAGGNTTCTGGCTGTGAATTANAAATGTCATCGNATTATTNA
TTTGTTACCAAANTGTTNGGCTTTNGCTTCGAAGTTGGNACCACTCTTACATGTAAATGGCGATGGCTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18642.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis