Browse Element(s) Details


Os.28949.1.S1_at

Description gb:AK111528.1
DB_XREF= gi:37988191
TID=Os.28949.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003G20, full insert sequence.
FL= gb:AK111528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1213011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12090Os.4921.1.S1_at11/1112+6624346..6624930expressed protein
LOC_Os12g12100NANA12+6627865..6628454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12110OsAffx.31708.1.S1_at9/1112+6639548..6642074hypothetical protein
LOC_Os12g12120OsAffx.31705.2.S1_at4/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12120OsAffx.27330.1.S1_s_at1/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12130Os.28949.1.S1_at11/1112+6649801..6653129Leucine Rich Repeat family protein, expressed
LOC_Os12g12140NANA12+6656329..6656604hypothetical protein
LOC_Os12g12150NANA12+6660198..6663421transposon protein, putative, unclassified
LOC_Os12g12160NANA12+6664052..6670208transposon protein, putative, unclassified
LOC_Os12g12170Os.18642.1.S1_x_at11/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed
LOC_Os12g12170Os.18642.2.S1_at9/1112+6676547..6678644Cytochrome b5-like Heme/Steroid binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28949.1.S1_at--790--131Chr12:6652543..6652567 (25 bp)
ATTAGACCTCTCCTCGAATAAGCTT
LOC_Os12g12130
Os.28949.1.S1_at--97--2691Chr12:6652562..6652586 (25 bp)
AAGCTTTCTGGTGAGATCCCGCAGG
LOC_Os12g12130
Os.28949.1.S1_at--844--5891Chr12:6652586..6652610 (25 bp)
GAGCTGGCATCATTGAACTTCCTTT
LOC_Os12g12130
Os.28949.1.S1_at--538--3071Chr12:6652656..6652680 (25 bp)
AATCATTACACTTCTCCACATTTTC
LOC_Os12g12130
Os.28949.1.S1_at--1003--7471Chr12:6652711..6652735 (25 bp)
GTGTGGACCTCCGTTGTCTAAACAA
LOC_Os12g12130
Os.28949.1.S1_at--401--2411Chr12:6652730..6652754 (25 bp)
AAACAATGCGGTTATCCAACTGAAC
LOC_Os12g12130
Os.28949.1.S1_at--610--4371Chr12:6652754..6652778 (25 bp)
CCAAACATGATGTCACACACTGCTG
LOC_Os12g12130
Os.28949.1.S1_at--311--9911Chr12:6652800..6652824 (25 bp)
TACTCTTTCTCTTCACAGCATTGGG
LOC_Os12g12130
Os.28949.1.S1_at--1056--7831Chr12:6652926..6652950 (25 bp)
GGTAGTGACTCTTGGTCAACCCAGC
LOC_Os12g12130
Os.28949.1.S1_at--542--7831Chr12:6652939..6652963 (25 bp)
GGTCAACCCAGCAACATTTAGTAAA
LOC_Os12g12130
Os.28949.1.S1_at--924--5911Chr12:6653092..6653116 (25 bp)
GAGCTATGTAGTTCTCAATTGCAGC
LOC_Os12g12130
Target Sequence 
ATTAGACCTCTCCTCGAATAAGCTTTCTGGTGAGATCCCGCAGGAGCTGGCATCATTGAACTTCCTTTCAATATTGAATT
TGTCTTATAATATGTTGGATGGAAAAATACCACAATCATTACACTTCTCCACATTTTCCAATGACTCTTTTGTGGGGAAT
ATTNGGTTGTGTGGACCTCCGTTGTCTAAACAATGCGGTTATCCAACTGAACCAAACATGATGTCACACACTGCTGAGAA
GAATTCCATAGATGTTCTACTCTTTCTCTTCACAGCATTGGGGTTTGGTATCTGTTTCGGAATTACAATTCTAGTGATAT
GGGGAGGCCACAACAGGAAACAACCTTGTGAGAGAGCAATTTTATACATTGGCAGAATAGTTTGGTAGTGACTCTTGGTC
AACCCAGCAACATTTAGTAAACTAATATTAATAATGAGGCATGTATGAGCTAAATAAAGAAGTGATATGTTATCACTGAT
ATGTGGTTGTTCTAATTTAAGCAACAAAGCNGACAGCATTGTATGCATGAAAAAGATAATTATGTCTGAGAGCTATGTAG
TTCTCAATTGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis