Browse Element(s) Details


Os.18647.1.S1_at

Description gb:AK101409.1
DB_XREF= gi:32986618
TID=Os.18647.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033037I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033037I18, full insert sequence.
FL= gb:AK101409.1 gb:AK059104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g378806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37850OsAffx.32074.1.S1_at10/1112+23222638..23225082expressed protein
LOC_Os12g37860Os.15365.1.S1_at11/1112+23232491..23239375expressed protein
LOC_Os12g37870Os.6425.1.S1_at11/1112+23241560..23245604ATP-citrate synthase, putative, expressed
LOC_Os12g37880Os.18647.1.S1_at6/1112+23246399..23249085expressed protein
LOC_Os12g37890Os.16918.1.S1_at11/1112+23250365..23259137expressed protein
LOC_Os12g37900NANA12+23259935..23260482expressed protein
LOC_Os12g37910Os.14915.1.S1_a_at11/1112+23261363..23265644GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os12g37920OsAffx.32075.1.S1_at11/1112+23269146..23272653expressed protein
LOC_Os12g37920Os.56047.1.S1_at3/1112+23269146..23272653expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18647.1.S1_at--982--8632Chr12:23247507..23247531 (25 bp)
TGGGCAGGTCTTGCTGTTCCAGCGA
LOC_Os12g37880
Os.18647.1.S1_at--197--6691Chr12:23247522..23247546 (25 bp)
GTTCCAGCGAAGTTCCTTTCAGTGC
LOC_Os12g37880
Os.18647.1.S1_at--144--7312Chr12:23247543..23247567 (25 bp)
GTGCTCCCTCACTCTGAGGAGAATA
LOC_Os12g37880
Os.18647.1.S1_at--806--3071Chr12:23248785..23248806 (22 bp)
AATAGGATTGTTTCACTCCCGGCTA
LOC_Os12g37880
Os.18647.1.S1_at--970--4831Chr12:23248803..23248827 (25 bp)
GCTAACCTGGACTTCATGATCTTCA
LOC_Os12g37880
Os.18647.1.S1_at--838--711Chr12:23248818..23248842 (25 bp)
ATGATCTTCAACCACCGCGGAAGGG
LOC_Os12g37880
Os.18647.1.S1_at--861--6791Chr12:23249075..23249099 (25 bp)
GTTATTCATTCACTAGCTTGTGAGA
NONE
Os.18647.1.S1_at--247--8051Chr12:23249152..23249176 (25 bp)
GGAGTTCGCAAAAACACATCCATTT
NONE
Os.18647.1.S1_at--943--9651Chr12:23249183..23249207 (25 bp)
TCACCAGTCACCACTGCATGAATGT
NONE
Os.18647.1.S1_at--505--5351Chr12:23249238..23249262 (25 bp)
GAAGATACCACGAAGCAGCTAATGT
NONE
Os.18647.1.S1_at--694--5411Chr12:23249265..23249289 (25 bp)
GAACCAAGGTATGGTGGCCCTGTTT
NONE
Target Sequence 
TGGGCAGGTCTTGCTGTTCCAGCGAAGTTCCTTTCAGTGCTCCCTCACTCTGAGGAGAATAGGATTGTTTCACTCCCGGC
TAACCTGGACTTCATGATCTTCAACCACCGCGGAAGGGCGCTACCTTCAGACCCAGACTTGAAGCTGAAGACATGATTGA
ACATTTACAGTTTCTGTTATTTACCACAGTAGGATNATCCATCCAGTTNTTTTTTTTGTGTCACTCATTGTTGAGGGGGA
GAAACATTTCCAAGAACTTAACGTCTACTATGTGTAACTCAAGTTTTTGTGTCACCTGAATTCTATATCTGTATNCCACT
CAATCTTGTGCCAGTCCATGTGAATTACCAGTTATTCATTCACTAGCTTGTGAGAGATATTGCGATGCATGGCTCTCCAT
GTACACACATCACAATTGTAGTGTTGTGGAGTTCGCAAAAACACATCCATTTCAGCACTCACCAGTCACCACTGCATGAA
TGTAAAAGTGCTTAGGTCTTGTTTAGAGGAGCTGAAGATACCACGAAGCAGCTAATGTGAGAACCAAGGTATGGTGGCCC
TGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis