Browse Element(s) Details


Os.18819.1.S1_at

Description gb:AK106800.1
DB_XREF= gi:32992009
TID=Os.18819.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B10, full insert sequence.
FL= gb:AK106800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0666011/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06610NANA5+3389850..3394296retrotransposon protein, putative, unclassified
LOC_Os05g06620Os.7307.3.S1_x_at1/115+3398518..3400491retrotransposon protein, putative, unclassified
LOC_Os05g06630Os.38041.1.S1_at11/115+3402684..3406845expressed protein
LOC_Os05g06630Os.38041.1.S2_at10/115+3402684..3406845expressed protein
LOC_Os05g06630Os.24178.1.A1_x_at2/115+3402684..3406845expressed protein
LOC_Os05g06640NANA5+3409036..3411131retrotransposon protein, putative, unclassified
LOC_Os05g06650Os.24080.1.A1_at11/115+3412487..3416256expressed protein
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed
LOC_Os05g06670Os.1814.1.S1_a_at11/115+3437635..3443885oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g06680Os.1814.3.A1_at11/115+3441606..3446708expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18819.1.S1_at--1105--6071Chr05:3417868..3418119 (25 bp)
GAGTTTGGCTCTACAGCGGTGATGC
LOC_Os05g06660
Os.18819.1.S1_at--90--8251Chr05:3417839..3417863 (25 bp)
GGCAGGGTCCCGGTTATCAGTTCTC
LOC_Os05g06660
Os.18819.1.S1_at--340--10171Chr05:3417825..3417849 (25 bp)
TATCAGTTCTCGGTACTGCGTGGAA
LOC_Os05g06660
Os.18819.1.S1_at--217--7011Chr05:3417813..3417837 (25 bp)
GTACTGCGTGGAAGCACTCGGCCTA
LOC_Os05g06660
Os.18819.1.S1_at--467--6611Chr05:3417776..3417800 (25 bp)
GATTGGCAATCTTGGTACCTTGACA
LOC_Os05g06660
Os.18819.1.S1_at--436--2371Chr05:3417574..3417598 (25 bp)
AAACCTGCTGAAGGGCTTATGCTGA
LOC_Os05g06660
Os.18819.1.S1_at--511--6471Chr05:3417551..3417575 (25 bp)
GATAAATGCATTCCTTCATGGTGAG
LOC_Os05g06660
Os.18819.1.S1_at--810--10531Chr05:3417537..3417561 (25 bp)
TTCATGGTGAGAAGCTTCCGACAAG
LOC_Os05g06660
Os.18819.1.S1_at--1047--3291Chr05:3417397..3417421 (25 bp)
CAAATCAATTTCAAGTGCGCCGTAA
LOC_Os05g06660
Os.18819.1.S1_at--335--7291Chr05:3417383..3417407 (25 bp)
GTGCGCCGTAAATTCAGTACTCTGT
LOC_Os05g06660
Os.18819.1.S1_at--14--6671Chr05:3417336..3417360 (25 bp)
GTTGACTATGACTTTCTTCTTTTGT
LOC_Os05g06660
Target Sequence 
GAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTA
CCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAAT
GGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTC
ATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGC
ATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGT
AAATTCAGTACTCTGTTGAACATTCTTTTANATCTGTTGTTGACTATGACTTTCTTCTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis