Browse Element(s) Details


Os.18949.1.S1_at

Description gb:AK061996.1
DB_XREF= gi:32972014
TID=Os.18949.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C11, full insert sequence.
FL= gb:AK061996.1 gb:AK065335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1832010/11Bystin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18260OsAffx.17769.1.S1_at11/119+11206999..11212451Protein kinase domain containing protein
LOC_Os09g18270NANA9+11215489..11216154transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18280NANA9+11217863..11218896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18290NANA9+11219542..11220242hypothetical protein
LOC_Os09g18300OsAffx.29910.1.S1_at11/119+11225371..11225772hypothetical protein
LOC_Os09g18310OsAffx.17770.1.S1_x_at10/119+11231463..11232157retrotransposon, putative, centromere-specific
LOC_Os09g18320Os.18949.1.S1_at10/119+11235232..11239921Bystin family protein, expressed
LOC_Os09g18330OsAffx.29913.1.S1_at11/119+11246739..11247256hypothetical protein
LOC_Os09g18340NANA9+11249798..11252334transposon protein, putative, unclassified
LOC_Os09g18350NANA9+11253661..11254530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g18360Os.19031.1.A1_at11/119+11257657..11267042Protein kinase domain containing protein, expressed
LOC_Os09g18360OsAffx.9066.1.S1_x_at1/119+11257657..11267042Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18949.1.S1_at--865--6171Chr09:11236640..11236664 (25 bp)
GAGGAGAGGGTCATGCCTGTTATAT
LOC_Os09g18320
Os.18949.1.S1_at--548--3331NONE
CACTCCTAGCCTTTGTGGAAAGATA
NONE
Os.18949.1.S1_at--875--2391Chr09:11236261..11236285 (25 bp)
AAACTTGCACGCTTGTTGGATCACC
LOC_Os09g18320
Os.18949.1.S1_at--573--3411Chr09:11236125..11236261 (25 bp)
CAGAAGCACTATTTGGTTACTCCAG
LOC_Os09g18320
Os.18949.1.S1_at--302--1071Chr09:11236092..11236116 (25 bp)
AGGGAACTTCGGATGAGCTGCAACA
LOC_Os09g18320
Os.18949.1.S1_at--282--3811Chr09:11235888..11235912 (25 bp)
CTCCCCAGTTTCTGTGATCACGAAA
LOC_Os09g18320
Os.18949.1.S1_at--126--8211Chr09:11235844..11235868 (25 bp)
GGAATGTTCCGGAAGTACCTATGGA
LOC_Os09g18320
Os.18949.1.S1_at--346--1731Chr09:11235770..11235794 (25 bp)
ACCAGTGTTGTAGTTTTGCTTGCCG
LOC_Os09g18320
Os.18949.1.S1_at--628--10271Chr09:11235756..11235780 (25 bp)
TTTGCTTGCCGAATGAACTTTTCAA
LOC_Os09g18320
Os.18949.1.S1_at--961--6151Chr09:11235731..11235755 (25 bp)
GAGGTATTTCAGTTCTATGCAGCAA
LOC_Os09g18320
Os.18949.1.S1_at--928--10111Chr09:11235716..11235740 (25 bp)
TATGCAGCAATGGATCGATGCCAGC
LOC_Os09g18320
Target Sequence 
GAGGAGAGGGTCATGCCTGTTATATGGCNATCAATNCACTCCTAGCCTTTGTGGAAAGATACAAGAATGAATTAGAGAAA
AAGGACAAGGAGAAACTTGCACGCTTGTTGGATCACCAGAAGCACTATTTGGTTACTCCAGAAATTCGTAGGGAACTTCG
GATGAGCTGCAACAGGGGTGAAAAGGACACAANCATGTCGATATGCTCCCCAGTTTCTGTGATCACGAAACCAATTGAAG
AAGACAGGTGGAATGTTCCGGAAGTACCTATGGAGGAGTAATCGTTTGATTCTTAATACTGGTGGGGAGGGGCAATTTTC
NGTACCAGTGTTGTAGTTTTGCTTGCCGAATGAACTTTTCAAGAGGTATTTCAGTTCTATGCAGCAATGGATCGATGCCA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis