Browse Element(s) Details


Os.19128.1.S1_at

Description gb:AK121977.1
DB_XREF= gi:37991600
TID=Os.19128.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108J21, full insert sequence.
FL= gb:AK121977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0920011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein
LOC_Os01g09160NANA1+4596579..4599829transposon protein, putative, unclassified
LOC_Os01g09170NANA1+4600649..4606804transposon protein, putative, unclassified
LOC_Os01g09180NANA1+4607869..4608850transposon protein, putative, unclassified
LOC_Os01g09190Os.30909.1.S1_at11/111+4611693..4612627expressed protein
LOC_Os01g09200Os.19128.1.S1_at11/111+4618480..4628164Protein kinase domain containing protein, expressed
LOC_Os01g09206NANA1+4639103..4639912retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09212NANA1+4640863..4641498retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09220Os.3808.4.S1_x_at11/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09220Os.3808.2.S1_x_at2/111+4643236..4645055transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g09230Os.10811.1.S1_at11/111+4646958..4648763expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19128.1.S1_at--475--611Chr01:4619024..4619048 (25 bp)
ATGCGACGCCTGAACGATGTGGCTT
LOC_Os01g09200
Os.19128.1.S1_at--712--791Chr01:4619008..4619032 (25 bp)
ATGTGGCTTCATCCGGAGAACCTGC
LOC_Os01g09200
Os.19128.1.S1_at--72--8071Chr01:4618994..4619018 (25 bp)
GGAGAACCTGCTTGTTTTAGGCCAG
LOC_Os01g09200
Os.19128.1.S1_at--1057--1011Chr01:4618971..4618995 (25 bp)
AGGTTATCTGCCCTGTTAATCGTTG
LOC_Os01g09200
Os.19128.1.S1_at--427--3051Chr01:4618954..4618978 (25 bp)
AATCGTTGGCGAGCATTCTGTAGAA
LOC_Os01g09200
Os.19128.1.S1_at--974--3611Chr01:4618857..4618881 (25 bp)
CTTGTGGTCTTTGTTGTAGCGTGTT
LOC_Os01g09200
Os.19128.1.S1_at--1141--7911Chr01:4618770..4618794 (25 bp)
GGTTGGCAGAGCTAATTGCCGCCTT
LOC_Os01g09200
Os.19128.1.S1_at--509--7251Chr01:4618727..4618751 (25 bp)
GTCCGCTGACATTTTCATCTTGTGG
LOC_Os01g09200
Os.19128.1.S1_at--91--10071Chr01:4618594..4618618 (25 bp)
TAGTCTATGGTCTCCCGTTGCAGAA
LOC_Os01g09200
Os.19128.1.S1_at--876--391Chr01:4618538..4618562 (25 bp)
ATCAGTTATATCTTTGGTCATGTAC
LOC_Os01g09200
Os.19128.1.S1_at--41--5451Chr01:4618506..4618530 (25 bp)
GAACCCTCTGACTTCATAATTTTGT
LOC_Os01g09200
Target Sequence 
ATGCGACGCCTGAACGATGTGGCTTCATCCGGAGAACCTGCTTGTTTTAGGCCAGGTTATCTGCCCTGTTAATCGTTGGC
GAGCATTCTGTAGAAATCCNACAAAGCTTCTAGTTGTAAAAATAGTATGCTGAGTACTTAACNAAACAGCCCGTGTACCC
AGGGGGGCTTGTGGTCTTTGTTGTAGCGTGTTGGGACCAAGCGGAAATGGGCAGGTTGGGGGGAGTATTTGCACCTTTGG
GGGCTGGCTGCCCAGGTTGGCAGAGCTAATTGCCGCCTTCTCTTGTGGCAGTTCCTGGTCCGCTGACATTTTCATCTTGT
GGAAACAAACAAATAAGGCAAGCTATGCTGTTGTTGCTGTTGCCGGTGGTGTTTTGATGTGCGTGTGTATCAGCAGAAAT
TTTCCGTAACGACCCTTTTGCCCCCTAGTCTATGGTCTCCCGTTGCAGAAATGCCTAATTTTGTCTGTTAGTGTAATGTT
CATCAGTTATATCTTTGGTCATGTACTATTATTNGAACCCTCTGACTTCATAATTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis