Browse Element(s) Details


Os.19229.1.S1_a_at

Description gb:AK060505.1
DB_XREF= gi:32970523
TID=Os.19229.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19229 (NCBI UniGene Cluster)
UG_TITLE=MRNA for BP-5 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H11, full insert sequence.
FL= gb:AK060505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4381010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43800OsAffx.13332.1.S1_x_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.13332.1.S1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800Os.9648.1.A1_at11/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43800OsAffx.26050.13.S1_x_at2/113+24471620..24488796DIRP family protein, expressed
LOC_Os03g43810Os.19229.1.S1_a_at10/113+24498759..24503742Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific
LOC_Os03g43820Os.57025.1.S1_at11/113+24519125..24519925pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g43830OsAffx.13333.1.S1_at11/113+24521452..24522012hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19229.1.S1_a_at--638--4511Chr03:24501079..24501215 (25 bp)
GCCGACCCAGCTTTATTTGCAGGGA
LOC_Os03g43810
Os.19229.1.S1_a_at--268--2971Chr03:24501282..24501306 (25 bp)
AATGGAAGCATTATGCCTCCTCCTG
LOC_Os03g43810
Os.19229.1.S1_a_at--917--131Chr03:24501291..24501315 (25 bp)
ATTATGCCTCCTCCTGAAAATGCAC
LOC_Os03g43810
Os.19229.1.S1_a_at--748--3351Chr03:24501313..24501739 (25 bp)
CACCCAACACAGGATCAGGATAATT
LOC_Os03g43810
Os.19229.1.S1_a_at--813--6372Chr08:2684559..2684579 (21 bp)
GATCCTGAATGAGTATATATGGCAA
NONE
Os.19229.1.S1_a_at--873--5191Chr03:24503452..24503476 (25 bp)
GCAATAAAGGTAACTGAGCTGCACA
LOC_Os03g43810
Os.19229.1.S1_a_at--522--9511Chr03:24503581..24503605 (25 bp)
TCTCTTGAAGATCTCTAACTGATTG
LOC_Os03g43810
Os.19229.1.S1_a_at--551--7691Chr03:24503613..24503637 (25 bp)
GGGTATGATGGCATGTTCAAAGCAT
LOC_Os03g43810
Os.19229.1.S1_a_at--242--4971Chr03:24503634..24503658 (25 bp)
GCATAAGGCTGGTCTGGTCTTTTGT
LOC_Os03g43810
Os.19229.1.S1_a_at--830--7271Chr03:24503690..24503714 (25 bp)
GTGCCATACATTTGGAACAAGAGTA
LOC_Os03g43810
Os.19229.1.S1_a_at--196--6891Chr03:24503719..24503743 (25 bp)
GTATAAATTGACACACTTCTTTTCA
NONE
Target Sequence 
GCCGACCCAGCTTTATTTGCAGGGAGTGGGGTATTATCCGTTGGGGGCCAAGGCCGTGCAGCAGCAGCAAAATCCACCAC
TTCACGTGCCAAATGGAAGCATTATGCCTCCTCCTGAAAATGCACCCAACACAGGATCAGGATAATTAACAAAAAAGAGT
GAGAGCAAAGAGGAAGAAAACATTCATGGTTGCATTGATCCTGAATGAGTATATATGGCAATAAAGGTAACTGAGCTGCA
CAGCAGGACGGAGCAGAGGAATTTGACAGGGGGACGATTTCTTTAGCTTTTTCCCCTCTTTGGGAAGCCAGGAACTAGCT
GTGATGTGCAGAAGATGTTAGCAAAATCTCTTGAAGATCTCTAACTGATTGTAATTAGGGGTATGATGGCATGTTCAAAG
CATAAGGCTGGTCTGGTCTTTTGTACCNNTTGGAATTAACATTAGAGACAGAAATTGTGCCATACATTTGGAACAAGAGT
AGTTAGTATAAATTGACACACTTCTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19229.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis