Browse Element(s) Details


OsAffx.13333.1.S1_at

Description tigr:9631.m04229
TID=OsAffx.13333.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4383011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43810Os.19229.1.S1_a_at10/113+24498759..24503742Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific
LOC_Os03g43820Os.57025.1.S1_at11/113+24519125..24519925pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g43830OsAffx.13333.1.S1_at11/113+24521452..24522012hypothetical protein
LOC_Os03g43840Os.48042.1.S1_at11/113+24528744..24533424zinc finger protein, putative, expressed
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13333.1.S1_at--697--3311Chr03:24521574..24521598 (25 bp)
CACAGGCGGTAGAGAGCAAGCAGCA
LOC_Os03g43830
OsAffx.13333.1.S1_at--219--511Chr03:24521653..24521677 (25 bp)
ATCGTCCCTAGCATAGCTCAGGCGA
LOC_Os03g43830
OsAffx.13333.1.S1_at--1025--8311Chr03:24521700..24521724 (25 bp)
GGCTCAAGCGATTGCCGAGGCTGAA
LOC_Os03g43830
OsAffx.13333.1.S1_at--868--4051Chr03:24521715..24521739 (25 bp)
CGAGGCTGAAGCAACGGCAACGCAA
LOC_Os03g43830
OsAffx.13333.1.S1_at--630--691Chr03:24521770..24521794 (25 bp)
ATGATACGGCTACAGGACACACTTA
LOC_Os03g43830
OsAffx.13333.1.S1_at--13--8151Chr03:24521784..24521808 (25 bp)
GGACACACTTAGTCAGATGCAAGAG
LOC_Os03g43830
OsAffx.13333.1.S1_at--651--8931Chr03:24521834..24521858 (25 bp)
TGCAAGCCAAGACAACCCTTTCGAC
LOC_Os03g43830
OsAffx.13333.1.S1_at--430--5151Chr03:24521890..24521914 (25 bp)
GCAACGGCGGCACAAGCGATTCAAG
LOC_Os03g43830
OsAffx.13333.1.S1_at--947--111Chr03:24521908..24521932 (25 bp)
ATTCAAGCTTCGACCGCGATAGCCC
LOC_Os03g43830
OsAffx.13333.1.S1_at--274--4631Chr03:24521923..24521947 (25 bp)
GCGATAGCCCAAGCCAATCAGGCTT
LOC_Os03g43830
OsAffx.13333.1.S1_at--706--3071Chr03:24521938..24521962 (25 bp)
AATCAGGCTTCGACTCCTCTGCTGC
LOC_Os03g43830
Target Sequence 
CACAGGCGGTAGAGAGCAAGCAGCAGCTTCGACCATCCAAGTCCGAACCACCCAAGCTTCGACTCAGGCGACGGCCTCCA
TCGTCCCTAGCATAGCTCAGGCGACGACCTCCATCGTCCCCGGCACGGCTCAAGCGATTGCCGAGGCTGAAGCAACGGCA
ACGCAAGGGGCCGAGATGGAAGCCATGCATCAGAACATGATACGGCTACAGGACACACTTAGTCAGATGCAAGAGCAACA
TCAAGTCTATGAGGCAGCCCTGCAAGCCAAGACAACCCTTTCGACTTCGGCGAGTCCCAATCCATCTTCAACACCCGCAA
CGGCGGCACAAGCGATTCAAGCTTCGACCGCGATAGCCCAAGCCAATCAGGCTTCGACTCCTCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis