Browse Element(s) Details


Os.19271.1.S1_at

Description gb:AK107580.1
DB_XREF= gi:32992789
TID=Os.19271.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E02, full insert sequence.
FL= gb:AK107580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4504011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45020OsAffx.25936.1.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.7.S1_s_at11/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.2.S1_x_at4/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45020OsAffx.25936.5.S1_x_at2/112+27278372..27281410transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g45030NANA2+27283475..27284062hypothetical protein
LOC_Os02g45040Os.19271.1.S1_at11/112+27291229..27294139retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g45054Os.17568.1.S1_at11/112+27310155..27319782Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19271.1.S1_at--48--6111Chr02:27291795..27291819 (25 bp)
GAGTCTCCAGTTGATGTTGCTACGA
LOC_Os02g45040
Os.19271.1.S1_at--801--4772Chr07:20351232..20351545 (25 bp)
GCTGCTGCTGAAATTTCTGGGCGAA
NONE
Os.19271.1.S1_at--49--5791Chr02:27291648..27291672 (25 bp)
GACGACGCTGCGACTTCTGACGCAA
LOC_Os02g45040
Os.19271.1.S1_at--173--691Chr02:27291494..27291518 (25 bp)
ATGACTCCTTGGCTGTTCCGATCGA
LOC_Os02g45040
Os.19271.1.S1_at--521--9511Chr02:27291449..27291473 (25 bp)
TCTCGGACAGCTCGTCGTCAAGATC
LOC_Os02g45040
Os.19271.1.S1_at--1050--2791Chr02:27291430..27291454 (25 bp)
AAGATCGTCCATGGCGACCAACTCT
LOC_Os02g45040
Os.19271.1.S1_at--611--2531Chr02:27291411..27291435 (25 bp)
AACTCTACGGCGAACAACTCTACCA
LOC_Os02g45040
Os.19271.1.S1_at--939--2531Chr02:27291396..27291420 (25 bp)
AACTCTACCACATCCAGCGAAGCTG
LOC_Os02g45040
Os.19271.1.S1_at--951--1691Chr02:27291349..27291373 (25 bp)
AGCCACTCGTCTACAACAGGGAATT
LOC_Os02g45040
Os.19271.1.S1_at--668--3411Chr02:27291305..27291329 (25 bp)
CAGACGGTACAGTTCGTTGGGCAAA
LOC_Os02g45040
Os.19271.1.S1_at--1090--5431Chr02:27291261..27291285 (25 bp)
GAACCTGATACTTTGAATGATGCTT
LOC_Os02g45040
Target Sequence 
GAGTCTCCAGTTGATGTTGCTACGAGTGCAGATGCTGCTGCTGAAATTTCTGGGCGAACAGGGCAAATTTTGGAGCAAAA
CACCCATGGTTTTCTGCTCGGCGGGCGGCCCGGGCACTCCGCGGCTCCTAACACTCACGCAGCCCCTGACGACGCTGCGA
CTTCTGACGCAACTGCGGCGCATCATCCTGGGGATATAGGCGCTGCAGCCGGCTCTTCTCTCAGCCGATCGCCATCCACC
AGCCATTCCTCGTCGCGTGTCTCCGACAGTGCGCCCGAGCCGGCGTCTCCTCCACGCGGCGATGACTCCTTGGCTGTTCC
GATCGACGGGGGCTCGTCGGAGCCTCTCTCGGACAGCTCGTCGTCAAGATCGTCCATGGCGACCAACTCTACGGCGAACA
ACTCTACCACATCCAGCGAAGCTGCCCTGACTCAGCCTCAACGACCAGCCACTCGTCTACAACAGGGAATTCGTAAACCC
AAGGTTTACACAGACGGTACAGTTCGTTGGGCAAATTTAATTACTGCTGAGTCAGAACCTGATACTTTGAATGATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis