Browse Element(s) Details


Os.19361.1.S1_at

Description gb:AK099126.1
DB_XREF= gi:32984335
TID=Os.19361.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042C22, full insert sequence.
FL= gb:AK099312.1 gb:AK099126.1 gb:AK065130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4529011/11Beta-fructofuranosidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45254NANA4+26523040..26523317NA
LOC_Os04g45270Os.10880.1.S1_at11/114+26527617..26529441Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g45280Os.47891.1.S1_at11/114+26534844..26538208HIT domain containing protein, expressed
LOC_Os04g45290Os.19361.1.S1_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os04g45290Os.19361.1.S2_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os04g45300NANA4+26555834..26556283transposon protein, putative, unclassified
LOC_Os04g45310NANA4+26562106..26563938retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45320OsAffx.1353.1.S1_x_at1/114+26569077..26571104transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005773cellular_componentvacuole
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19361.1.S1_at--1021--8351Chr04:26547562..26547586 (25 bp)
GGCGGATCACCATCGGGTCCAAGGA
LOC_Os04g45290
Os.19361.1.S1_at--592--7031Chr04:26547614..26547638 (25 bp)
GTACAAGACGGAGGACTTCCTGCAC
LOC_Os04g45290
Os.19361.1.S1_at--459--8991Chr04:26547772..26547796 (25 bp)
TGAAGCACGTACTCAAGGCCAGCCT
LOC_Os04g45290
Os.19361.1.S1_at--539--4451Chr04:26547793..26547817 (25 bp)
GCCTCGACGACGACAGAAACGACTA
LOC_Os04g45290
Os.19361.1.S1_at--675--2111Chr04:26547805..26547829 (25 bp)
ACAGAAACGACTACTACGCCATCGG
LOC_Os04g45290
Os.19361.1.S1_at--719--5971Chr04:26547843..26547867 (25 bp)
GAGACCGATACCTGGACGCCGGACA
LOC_Os04g45290
Os.19361.1.S1_at--147--8111Chr04:26547856..26547880 (25 bp)
GGACGCCGGACAACGCCGACATCGA
LOC_Os04g45290
Os.19361.1.S1_at--159--5831Chr04:26547983..26548007 (25 bp)
GACCGACAGCGAGCGGGCTGACATA
LOC_Os04g45290
Os.19361.1.S1_at--722--4751Chr04:26547999..26548023 (25 bp)
GCTGACATACTCAAGGGCTGGGCCT
LOC_Os04g45290
Os.19361.1.S1_at--539--2871Chr04:26548011..26548031 (21 bp)
AAGGGCTGGGCCTCCCTTCAGTCAA
LOC_Os04g45290
Os.19361.1.S1_at--845--10651Chr04:26551456..26551480 (25 bp)
TTCCGAGGACAGTTATGCTGGACAC
LOC_Os04g45290
Target Sequence 
GGCGGATCACCATCGGGTCCAAGGACCGCGACCACGCGGGGCTGGCGCTCGTGTACAAGACGGAGGACTTCCTGCACTAC
GACCTGCTGCCCACGCTGCTGCACGTCGTCAAGGGCACCGGCATGTGGGAGTGCGTGGACTTGTACCCGGTGTCCACCTC
GCCGGCCGTCGAGGACGGGCTCGAGACGTCCACCCCGCCGGGGCCCGGCGTGAAGCACGTACTCAAGGCCAGCCTCGACG
ACGACAGAAACGACTACTACGCCATCGGCACCTACGACGGCGAGACCGATACCTGGACGCCGGACAACGCCGACATCGAC
GTCGGGATCGGGCTCCGGTACGACTACGGCAAGTTCTACGCGTCCAAGACGTTCTACGACCCCGTCGGGCGGCGTCGCGT
GCTATGGGGGTGGATCGGCGAGACCGACAGCGAGCGGGCTGACATACTCAAGGGCTGGGCCTCCCTTCAGTCAATTCCGA
GGACAGTTATGCTGGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis