Browse Element(s) Details


Os.47891.1.S1_at

Description gb:AK108422.1
DB_XREF= gi:32993631
TID=Os.47891.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-A03, full insert sequence.
FL= gb:AK108422.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4528011/11HIT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA
LOC_Os04g45270Os.10880.1.S1_at11/114+26527617..26529441Eukaryotic aspartyl protease family protein, expressed
LOC_Os04g45280Os.47891.1.S1_at11/114+26534844..26538208HIT domain containing protein, expressed
LOC_Os04g45290Os.19361.1.S1_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os04g45290Os.19361.1.S2_at11/114+26546309..26552805Beta-fructofuranosidase 1 precursor, putative, expressed
LOC_Os04g45300NANA4+26555834..26556283transposon protein, putative, unclassified
LOC_Os04g45310NANA4+26562106..26563938retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009117biological_processnucleotide metabolism
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47891.1.S1_at--618--5111Chr04:26536286..26536310 (25 bp)
GCACTATCTTGTCATACCCATTGAA
LOC_Os04g45280
Os.47891.1.S1_at--717--5411Chr04:26536234..26536257 (24 bp)
GAACCACCGAAGATCACCAGTTAGT
LOC_Os04g45280
Os.47891.1.S1_at--631--3051Chr04:26536077..26536101 (25 bp)
AATCGGGATGCTCCCAATTCGGAGG
LOC_Os04g45280
Os.47891.1.S1_at--69--6811Chr04:26535855..26535879 (25 bp)
GTTTTCACCAGCCACCATTTAATAG
LOC_Os04g45280
Os.47891.1.S1_at--1054--431Chr04:26535816..26535840 (25 bp)
ATCTTCACTGCTTGGCATTGCCATT
LOC_Os04g45280
Os.47891.1.S1_at--1082--9811Chr04:26535679..26535703 (25 bp)
TAAAATATACACCTCTTGGTCCCCT
LOC_Os04g45280
Os.47891.1.S1_at--281--5231Chr04:26535619..26535643 (25 bp)
GAATACGCCCATAGTCTACCGTTAT
LOC_Os04g45280
Os.47891.1.S1_at--1088--9991Chr04:26535499..26535523 (25 bp)
TAGACTAAATCAGACCCACTCTTTC
LOC_Os04g45280
Os.47891.1.S1_at--943--5191Chr04:26535433..26535457 (25 bp)
GAATTTCTTTTCATGGTGGACAGCC
LOC_Os04g45280
Os.47891.1.S1_at--67--7731Chr04:26535419..26535443 (25 bp)
GGTGGACAGCCTTAGCTTACAAACA
LOC_Os04g45280
Os.47891.1.S1_at--42--3371Chr04:26535381..26535405 (25 bp)
CACCTATGGACCTTTTATGGCCTTT
LOC_Os04g45280
Target Sequence 
GCACTATCTTGTCATACCCATTGAACATATACCTACTGTCAATAATCTCCAAAGAACCACCGAAGATCACCAGTTAGTTA
GTCACATGTTGGCAGTAGGAAGAGATTTACTCAATCGGGATGCTCCCAATTCGGAGGAACAGAGATTTGGTTTTCACCAG
CCACCATTTAATAGTGTTGATCACCTTCATCTTCACTGCTTGGCATTGCCATTTACGCCCAGCTGGAGGCAAGTAAAATA
TACACCTCTTGGTCCCCTTGGAGGGTTTATTGAAGCTGAGAGTCTATTGGAAAGAATACGCCCATAGTCTACCGTTATCA
CAACTACCGGTACAAGCTATTCTTGCTTAACTTTTGTTGTATTGTCATTTGTACGTGATTCATTGTACATTCACAACACA
TGGTCTGAAATTGTAGACTAAATCAGACCCACTCTTTCTNGGATGTTGAGCTGCATTGAGTTGATAAATGCCTGCTGTAT
GAATTTCTTTTCATGGTGGACAGCCTTAGCTTACAAACAAAGGAATAATAACCACCTATGGACCTTTTATGGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis