Browse Element(s) Details


Os.19406.1.S1_at

Description gb:AK101165.1
DB_XREF= gi:32986374
TID=Os.19406.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028D10, full insert sequence.
FL= gb:AK102959.1 gb:AK073624.1 gb:AK101165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0844011/11Two-component response regulator ARR12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08420NANA6+4112423..4115755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g08440Os.19406.1.S1_at11/116+4136249..4141662Two-component response regulator ARR12, putative, expressed
LOC_Os06g08450OsAffx.15311.1.S1_at11/116+4141852..4149977ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein
LOC_Os06g08460NANA6+4160338..4161798Exo70 exocyst complex subunit family protein
LOC_Os06g08470Os.15792.1.S1_at11/116+4161948..4166025expressed protein
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19406.1.S1_at--819--2991Chr06:4140719..4140743 (25 bp)
AATGCAAGTGCGTCAATACTTCCGC
LOC_Os06g08440
Os.19406.1.S1_at--547--5311Chr06:4141243..4141267 (25 bp)
GAAGGATGATCTCCCATTCATGGAC
LOC_Os06g08440
Os.19406.1.S1_at--1155--2491Chr06:4141271..4141295 (25 bp)
GAATTGGGCTGTGACCTTTTTCCAC
LOC_Os06g08440
Os.19406.1.S1_at--608--10291Chr06:4141289..4141313 (25 bp)
TTTCCACTTGGTGCCTGCATATGAA
LOC_Os06g08440
Os.19406.1.S1_at--884--5251Chr06:4141311..4141335 (25 bp)
GAATCCATCATTTCGGACACCAAAG
LOC_Os06g08440
Os.19406.1.S1_at--518--9111Chr06:4141364..4141388 (25 bp)
TGCTGCCTGATCTGTGCTACTTCAT
LOC_Os06g08440
Os.19406.1.S1_at--262--4851Chr06:4141379..4141403 (25 bp)
GCTACTTCATCCAGGCTTTGTGTAT
LOC_Os06g08440
Os.19406.1.S1_at--935--7531Chr06:4141424..4141448 (25 bp)
GTGGCTTGTAATCTTGCTTTATCTC
LOC_Os06g08440
Os.19406.1.S1_at--756--10351Chr06:4141441..4141465 (25 bp)
TTTATCTCTTCTCTAGGGTTGGCTA
LOC_Os06g08440
Os.19406.1.S1_at--541--9771Chr06:4141509..4141533 (25 bp)
TAATGTCAGCGCCTTTTCTAGTCAA
LOC_Os06g08440
Os.19406.1.S1_at--876--10071Chr06:4141568..4141592 (25 bp)
TAGTGTTTGCTGCACCTTCTCAGAC
LOC_Os06g08440
Target Sequence 
AATGCAAGTGCGTCAATACTTCCGCAAATGAAGTTTGACACAAGAATATCAGAAGAGAAAATGAAGCAGAAGAATACATA
TGACTTGGGTAGTTCAAAGCTGCAGGGTGGATTTAATTCTAGTGGCTGCAATTTTGATGGCCTTCTCAATTCCATAATCA
AAGTGGAGAAGGATGATCTCCCATTCATGGACAATGAATTGGGCTGTGACCTTTTTCCACTTGGTGCCTGCATATGAATC
CATCATTTCGGACACCAAAGATTTTGCATAATCTAAAAGAGTCAGCTGTGCTGCCTGATCTGTGCTACTTCATCCAGGCT
TTGTGTATACTAGGATCTAGGGACAGTAGTGGCTTGTAATCTTGCTTTATCTCTTCTCTAGGGTTGGCTATGGAAGTATG
GTTAGATCAAGATAAGAAGAAAATATAATGCTGTAATGTCAGCGCCTTTTCTAGTCAAAANNNNNNNNNNNNNNNAANNA
AGCAACCACATNTAGTGTTTGCTGCACCTTCTCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis