Browse Element(s) Details


Os.19589.1.S1_at

Description gb:AK069997.1
DB_XREF= gi:32980021
TID=Os.19589.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19589 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038G06, full insert sequence.
FL= gb:AK069997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4304011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43010NANA4+25232542..25232865retrotransposon protein, putative, unclassified
LOC_Os04g43020Os.56219.1.A1_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020OsAffx.26438.1.S1_x_at11/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43020Os.39431.1.S1_x_at1/114+25236117..25240710protein kinase family protein, putative, expressed
LOC_Os04g43030OsAffx.26669.1.S1_at11/114+25241151..25249210Lipase family protein, expressed
LOC_Os04g43040Os.19589.1.S1_at11/114+25249577..25252424expressed protein
LOC_Os04g43050Os.27988.1.A1_at11/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43050OsAffx.26439.1.S1_x_at10/114+25254997..25262379RNase3 domain containing protein, expressed
LOC_Os04g43060OsAffx.14250.1.S1_at11/114+25273148..25274023enzyme of the cupin superfamily, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19589.1.S1_at--765--6971Chr04:25250839..25250863 (25 bp)
GTACCGAGGGTCAGCAGCAACGCCA
LOC_Os04g43040
Os.19589.1.S1_at--153--6571Chr04:25250723..25250747 (25 bp)
GATTCAGATGCAACTCCGGCAGAGT
LOC_Os04g43040
Os.19589.1.S1_at--11--6111Chr04:25250702..25250726 (25 bp)
GAGTCTGCTACTAGTGTGGACACTA
LOC_Os04g43040
Os.19589.1.S1_at--207--7531Chr04:25250692..25250711 (20 bp)
GTGGACACTAGTAGCCATGTTCAGA
LOC_Os04g43040
Os.19589.1.S1_at--826--5111Chr04:25250120..25250144 (25 bp)
GCACTATCAACCTTTGGAGCACTGG
LOC_Os04g43040
Os.19589.1.S1_at--45--9951Chr04:25250083..25250107 (25 bp)
TACGATCGGCCCAGATGTCCTTTGA
LOC_Os04g43040
Os.19589.1.S1_at--294--5671Chr04:25249928..25249952 (25 bp)
GACATGTTATCTAGTTTCTCTCAAA
LOC_Os04g43040
Os.19589.1.S1_at--486--1971Chr04:25249890..25249914 (25 bp)
ACTGTTGATTCAGCCACGCGTGCAA
LOC_Os04g43040
Os.19589.1.S1_at--957--171Chr04:25249724..25249748 (25 bp)
ATTTTTTCGTGCTTTGCAGTGTGCC
LOC_Os04g43040
Os.19589.1.S1_at--921--8171Chr04:25249682..25249706 (25 bp)
GGAACGTTGCTATTCTCATCTTAGT
LOC_Os04g43040
Os.19589.1.S1_at--707--5251Chr04:25249598..25249622 (25 bp)
GAATCGAGATGCCTCTGGTCATAAA
LOC_Os04g43040
Target Sequence 
GTACCGAGGGTCAGCAGCAACGCCAGANNNTGGCAGCCATGATTCAGATGCAACTCCGGCAGAGTCTGCTACTAGTGTGG
ACACTAGTAGCCATGTTCAGAAGGCAAGATCAAAAGCACTATCAACCTTTGGAGCACTGGTATCTCCAAAACTACGATCG
GCCCAGATGTCCTTTGAAACAGCACTTGAATTAATTGTGGAATTAGCAAATTCTAGGTCAGACATGTTATCTAGTTTCTC
TCAAATAAAGGGGGANTGACTGTTGATTCAGCCACGCGTGCAACACATCATGTTCAGAAGCATTTCCGTGCTGCTGTTTG
ATCTGTCATCTATATACCAACTACTTCACTACGGTAATCAATAATTCCATACATCAGACCTTCATTATGGGCAAGACTTT
NATCTCTGTAGATTTGTCCGATGAATTTTTTCGTGCTTTGCAGTGTGCCNANGAGCTAATGAGCNAACGGAACGTTGCTA
TTCTCATCTTAGTTTTTTTTTTTTTTTTTAACAAACAGCAGCNATTGTAGAAAACTTTATTTAGATGTTGATATGAATCG
AGATGCCTCTGGTCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis