Browse Element(s) Details


Os.19722.1.S2_at

Description gb:AU173211
DB_XREF= gi:12622998
DB_XREF=AU173211
CLONE=R1727
TID=Os.19722.1
CNT=8
FEA=FLmRNA
TIER=ConsEnd
STK=0
UG=Os.19722 (NCBI UniGene Cluster)
UG_TITLE=Partial mRNA for phophatdylinositol 4-kinase (pi4k1 gene)
FL= gb:AK073735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1042011/11Phosphatidylinositol 4-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19722.1.S2_at--152--5711Chr11:5649370..5649394 (25 bp)
GACTAGCCAGGTACAGCCACCATGA
LOC_Os11g10420
Os.19722.1.S2_at--714--7031Chr11:5649360..5649384 (25 bp)
GTACAGCCACCATGATTTCTACGAG
LOC_Os11g10420
Os.19722.1.S2_at--630--10311Chr11:5649345..5649369 (25 bp)
TTTCTACGAGCGAAACACGCCTTTG
LOC_Os11g10420
Os.19722.1.S2_at--76--1831Chr11:5649329..5649353 (25 bp)
ACGCCTTTGTGTTTTGCATTTCGCA
LOC_Os11g10420
Os.19722.1.S2_at--814--10271Chr11:5649317..5649341 (25 bp)
TTTGCATTTCGCATACCTGGAGTCC
LOC_Os11g10420
Os.19722.1.S2_at--342--9591Chr11:5649185..5649209 (25 bp)
TCATACTAGGAGGTTTGCTACTGGT
LOC_Os11g10420
Os.19722.1.S2_at--211--4851Chr11:5649169..5649193 (25 bp)
GCTACTGGTGAAGCTTTTCAGCCCA
LOC_Os11g10420
Os.19722.1.S2_at--74--8991Chr11:5649161..5649185 (25 bp)
TGAAGCTTTTCAGCCCATTTTACTG
LOC_Os11g10420
Os.19722.1.S2_at--727--6271Chr11:5649025..5649049 (25 bp)
GATGTATCTGTCTATGTGAGTTGGG
LOC_Os11g10420
Os.19722.1.S2_at--299--6851Chr11:5648972..5648996 (25 bp)
GTTTGCGCGATTGTTGTCTTGGTAA
LOC_Os11g10420
Os.19722.1.S2_at--647--7831Chr11:5648952..5648976 (25 bp)
GGTAATCCTGTGATATCCCAAATTA
LOC_Os11g10420
Target Sequence 
GACTAGCCAGGTACAGCCACCATGATTTCTACGAGCGAAACACGCCTTTGTGTTTTGCATTTCGCATACCTGGAGTCCCC
TGTGANACACACAGGCTATTGGCGCCTGCAATGCAACTTGCATNGCATTTCNCCCATTTGATGAGGTTGAGAATTGTATA
GTCGTCGGCAGTTATCTAGTTGAGNTCATACTAGGAGGTTTGCTACTGGTGAAGCTTTTCAGCCCATTTTACTGGAATTC
GGGACCCCCGAGCTGCATTGCTGTACAGACAATTGATTGACGTAGCTTGGACAGGATNTAGGAGAGGATGGAGCCATACA
NGCCGCAAAGTAAGTGTAAATTATAGATGTATCTGTCTATGTGAGTTGGGGAGTCACCTGGGACAGCAAAAAGGCTGGGT
TTGCGCGATTGTTGTCTTGGTAATCCTGTGATATCCCAAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19722.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis