Browse Element(s) Details


Os.1983.1.S1_at

Description gb:AB007627.2
DB_XREF= gi:14090232
GEN=HOS58
TID=Os.1983.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.1983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) HOS58 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) HOS58 mRNA, complete cds.
FL= gb:AB007627.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0854411/11Homeobox protein knotted-1-like 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08520Os.10866.1.S1_at11/112+4598612..4601355Proteasome subunit beta type 3, putative, expressed
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1983.1.S1_at--246--5551Chr02:4628214..4628238 (25 bp)
GAAACTGGCATAGCAACCCAGCATC
LOC_Os02g08544
Os.1983.1.S1_at--41--6131Chr02:4628451..4628475 (25 bp)
GAGTGTAGTACATTCTCTCGTGCTC
LOC_Os02g08544
Os.1983.1.S1_at--1012--9511Chr02:4628464..4628488 (25 bp)
TCTCTCGTGCTCTGGTGTGACAAAA
LOC_Os02g08544
Os.1983.1.S1_at--55--5631Chr02:4628482..4628506 (25 bp)
GACAAAATCTGGAGACCGGCCCATT
LOC_Os02g08544
Os.1983.1.S1_at--541--5811Chr02:4628495..4628519 (25 bp)
GACCGGCCCATTCACAAGGGAATTG
LOC_Os02g08544
Os.1983.1.S1_at--821--6431Chr02:4628521..4628545 (25 bp)
GATCATAGGCGTAATCACTGGGCAA
LOC_Os02g08544
Os.1983.1.S1_at--308--1051Chr02:4628585..4628609 (25 bp)
AGGTGGGTGGTATTTGACTTTCGCA
LOC_Os02g08544
Os.1983.1.S1_at--350--8951Chr02:4628599..4628623 (25 bp)
TGACTTTCGCAGTATAGCATCGACT
LOC_Os02g08544
Os.1983.1.S1_at--1113--4971Chr02:4628615..4628639 (25 bp)
GCATCGACTGTCTGCTAATGTGATT
LOC_Os02g08544
Os.1983.1.S1_at--807--6571Chr02:4628750..4628774 (25 bp)
GATTCGGATTGGATATGTTCTCTGT
LOC_Os02g08544
Os.1983.1.S1_at--87--6731Chr02:4628766..4628790 (25 bp)
GTTCTCTGTTTTGATGCACGATGCA
LOC_Os02g08544
Target Sequence 
GAAACTGGCATAGCAACCCAGCATCCTCTGGTGAAAAGACCAAGAAGAAAAGAAACGTTACAGGTGATGGTGGTGCTGAG
CAATCGTGGTAGATTGGTTCAACATGAAACTAGATGTAAACAGTACCTTTTATTGTGAAGAGTGTAGTACATTCTCTCGT
GCTCTGGTGTGACAAAATCTGGAGACCGGCCCATTCACAAGGGAATTGCGATCATAGGCGTAATCACTGGGCAAAGAAGT
CATCTGAAATTGTAGCATAAGCGCACAAAACTGAGGTGGGTGGTATTTGACTTTCGCAGTATAGCATCGACTGTCTGCTA
ATGTGATTTTGTGAAGGAATGTTCTGTATAACCGATGAACGGAAGGAAGAATTGTATTGTGTATGTAATTGTGTATCTTA
TTTATCATGTAATATATATATGATATTAGGAGCTTTAAGATTCGGATTGGATATGTTCTCTGTTTTGATGCACGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis