Browse Element(s) Details


Os.17743.1.S1_at

Description gb:AK120718.1
DB_XREF= gi:37990341
TID=Os.17743.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002D22, full insert sequence.
FL= gb:AK120718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0906010/11Zn-finger in ubiquitin-hydrolases and other protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17743.1.S1_at--1138--5811Chr02:4631598..4631732 (25 bp)
GACCGGGTTTCTTAATGATATTCAT
LOC_Os02g09060
Os.17743.1.S1_at--10--10791Chr02:4630672..4630696 (25 bp)
TTGATAGCCCATTTTGAGCGCCAAA
LOC_Os02g09060
Os.17743.1.S1_at--153--311Chr02:4630647..4630671 (25 bp)
ATACCGTGGCAGAAGCTTCAGAGTC
LOC_Os02g09060
Os.17743.1.S1_at--267--2391Chr02:4630607..4630631 (25 bp)
AAACGGTAGCACAATTCTCTCGGTA
LOC_Os02g09060
Os.17743.1.S1_at--107--10251Chr02:4630529..4630553 (25 bp)
TTTGTTACCGTAAGCTGTATTTCAG
LOC_Os02g09060
Os.17743.1.S1_at--91--5471Chr02:4630441..4630465 (25 bp)
GACAGTTATGTGTTACCATGGTTAT
LOC_Os02g09060
Os.17743.1.S1_at--230--831Chr02:4630424..4630448 (25 bp)
ATGGTTATATACTTGTTGGCTTCTC
LOC_Os02g09060
Os.17743.1.S1_at--846--6611Chr02:4630410..4630434 (25 bp)
GTTGGCTTCTCAAATGCATAGTACA
LOC_Os02g09060
Os.17743.1.S1_at--101--4451Chr02:4630379..4630403 (25 bp)
GCCTTTGTACAGTGTGTTTTTCTGG
LOC_Os02g09060
Os.17743.1.S1_at--227--10311Chr02:4630361..4630385 (25 bp)
TTTCTGGACAATTTTCCTTGCCTGT
LOC_Os02g09060
Os.17743.1.S1_at--7--9251NONE
TCCTTGCCTGTCCATGTCAAGATTT
NONE
Target Sequence 
GACCGGGTTTCTTAATGATATTCATGAAAATCTTGTNAAAAACATGGAGATGTGGAGGGAGAGAATTCNAAAAGTAAAAG
AAAGGGAACAAGCTGCCANTTAGATTGAAAGATGAAAAAATTGAGAAGCTGGAGGAGGAGCTAAGGGATTTGATAGCCCA
TTTTGAGCGCCAAAATACCGTGGCAGAAGCTTCAGAGTCAATGTCAAGCGATATAAACGGTAGCACAATTCTCTCGGTAC
CATCTGAATCATCTGCAAGCAGCAACAGCAGCATCAGAAATTAGGATTGAGATTTGTTACCGTAAGCTGTATTTCAGCAT
CAGAAATTAGTCTGTTACTGGCCTTACCGTACATTCTTTGCTCCCTTATTATCTAATAATGACAGTTATGTGTTACCATG
GTTATATACTTGTTGGCTTCTCAAATGCATAGTACAAATCANGCCTTTGTACAGTGTGTTTTTCTGGACAATTTTCCTTG
CCTGTCCATGTCAAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis