Browse Element(s) Details


OsAffx.2548.1.S1_at

Description tigr:9630.m00821
TID=OsAffx.2548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to isoleucine-tRNA ligase homolog F24G24.120 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0910011/11isoleucine-tRNA ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2548.1.S1_at--703--10851Chr02:4660004..4660028 (25 bp)
TTGGCAGTCATCTCTTGACGTTGGA
LOC_Os02g09100
OsAffx.2548.1.S1_at--948--6811Chr02:4659742..4659766 (25 bp)
GTTTTTCGAGAATTCAAGCGCCCCG
LOC_Os02g09100
OsAffx.2548.1.S1_at--488--1651Chr02:4659726..4659750 (25 bp)
AGCGCCCCGCAAATGTGTCAGAGAA
LOC_Os02g09100
OsAffx.2548.1.S1_at--927--6271Chr02:4659603..4659627 (25 bp)
GATGTTTTGGTTATCTTGGATCTCC
LOC_Os02g09100
OsAffx.2548.1.S1_at--257--1411Chr02:4659024..4659048 (25 bp)
AGACTGCTCAGCTGAGACTGACCGA
LOC_Os02g09100
OsAffx.2548.1.S1_at--191--8931Chr02:4659006..4659030 (25 bp)
TGACCGACCCAGTTGATGTTTACTA
LOC_Os02g09100
OsAffx.2548.1.S1_at--916--291Chr02:4658970..4658994 (25 bp)
ATAGCAGTGATAGCTCTCTCGAAAA
LOC_Os02g09100
OsAffx.2548.1.S1_at--635--10211Chr02:4658841..4658865 (25 bp)
TATTAGAGATGCACTTGGTTCCCCT
LOC_Os02g09100
OsAffx.2548.1.S1_at--1071--5291Chr02:4658808..4658832 (25 bp)
GAAGGCACAGGCACAACCCAATGTG
LOC_Os02g09100
OsAffx.2548.1.S1_at--215--6171Chr02:4658328..4658450 (25 bp)
GAGGAGGCCTACAACTGTGTTTCAC
LOC_Os02g09100
OsAffx.2548.1.S1_at--173--371Chr02:4658300..4658324 (25 bp)
ATCACACCTTCCGTTTACTACAGGA
LOC_Os02g09100
Target Sequence 
TTGGCAGTCATCTCTTGACGTTGGAAGATATTAAGGTTTTTCGAGAATTCAAGCGCCCCGCAAATGTGTCAGAGAAGGAA
ATTGATGCTGCAGGAGATGGCGATGTTTTGGTTATCTTGGATCTCCAAGTTGATCAATCATTGTTTGAAGCTGGAGTTGT
TCGTGAGGTTGTGAACAAAATTCAGAAGTTGAAAAAGACTGCTCAGCTGAGACTGACCGACCCAGTTGATGTTTACTACA
GTTCACAGGATAGCAGTGATAGCTCTCTCGAAAAGATTTTGCAATCGCAGGATCAATATATTAGAGATGCACTTGGTTCC
CCTCTTACCTCGAAGGCACAGGCACAACCCAATGTGGAAGTAATCTGTGAGGAGGCCTACAACTGTGTTTCACACTATCA
CACCTTCCGTTTACTACAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis