Browse Element(s) Details


Os.10794.2.S1_at

Description gb:AK072584.1
DB_XREF= gi:32982607
TID=Os.10794.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132A01, full insert sequence.
FL= gb:AK072584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g091309/11ankryin repeat S-palmitoyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10794.2.S1_at--663--10031Chr02:4681363..4681387 (25 bp)
TAGAGTATAGTCTTGGAGGACTTGC
LOC_Os02g09130
Os.10794.2.S1_at--529--1191Chr02:4681360..4681384 (25 bp)
AGTATAGTCTTGGAGGACTTGCATT
LOC_Os02g09130
Os.10794.2.S1_at--407--291Chr02:4681357..4681381 (25 bp)
ATAGTCTTGGAGGACTTGCATTGTC
LOC_Os02g09130
Os.10794.2.S1_at--791--7131Chr02:4681354..4681378 (25 bp)
GTCTTGGAGGACTTGCATTGTCAGC
LOC_Os02g09130
Os.10794.2.S1_at--340--9591Chr02:4681353..4681377 (25 bp)
TCTTGGAGGACTTGCATTGTCAGCT
LOC_Os02g09130
Os.10794.2.S1_at--776--3591Chr02:4681352..4681376 (25 bp)
CTTGGAGGACTTGCATTGTCAGCTT
LOC_Os02g09130
Os.10794.2.S1_at--207--10851Chr02:4681351..4681375 (25 bp)
TTGGAGGACTTGCATTGTCAGCTTG
LOC_Os02g09130
Os.10794.2.S1_at--1147--8551Chr02:4681350..4681374 (25 bp)
TGGAGGACTTGCATTGTCAGCTTGA
LOC_Os02g09130
Os.10794.2.S1_at--128--8011Chr02:4681349..4681373 (25 bp)
GGAGGACTTGCATTGTCAGCTTGAT
LOC_Os02g09130
Os.10794.2.S1_at--386--6191Chr02:4681348..4681372 (25 bp)
GAGGACTTGCATTGTCAGCTTGATC
NONE
Os.10794.2.S1_at--95--951Chr02:4681347..4681371 (25 bp)
AGGACTTGCATTGTCAGCTTGATCA
NONE
Target Sequence 
TAGAGTATAGTCTTGGAGGACTTGCATTGTCAGCTTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10794.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis