Browse Element(s) Details


Os.53647.1.S1_s_at

Description gb:AK073734.1
DB_XREF= gi:32983757
TID=Os.53647.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033057I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057I06, full insert sequence.
FL= gb:AK073734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0914011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53647.1.S1_s_at--661--5131Chr02:4693203..4693227 (25 bp)
GCAACCACCTGCCAAAAAGAGGAAA
LOC_Os02g09140
Os.53647.1.S1_s_at--1071--1151Chr02:4693237..4693261 (25 bp)
AGTAACAGCCCTACCTTACAAGCAA
LOC_Os02g09140
Os.53647.1.S1_s_at--159--9811Chr02:4693239..4693263 (25 bp)
TAACAGCCCTACCTTACAAGCAAGA
LOC_Os02g09140
Os.53647.1.S1_s_at--268--2131Chr02:4693241..4693265 (25 bp)
ACAGCCCTACCTTACAAGCAAGAAC
LOC_Os02g09140
Os.53647.1.S1_s_at--1143--1492Chr04:30368061..30368496 (25 bp)
AGCCCTACCTTACAAGCAAGAACGT
NONE
Os.53647.1.S1_s_at--768--3651Chr02:4693251..4693275 (25 bp)
CTTACAAGCAAGAACGTGGCTCTGT
LOC_Os02g09140
Os.53647.1.S1_s_at--816--5971Chr02:4693355..4693379 (25 bp)
GAGAACAGGAAAAAAGAACACTTAG
LOC_Os02g09140
Os.53647.1.S1_s_at--184--10791Chr02:4693473..4693497 (25 bp)
TTGTACCCTCCAGACATTAGACATG
LOC_Os02g09140
Os.53647.1.S1_s_at--268--6971Chr02:4693475..4693499 (25 bp)
GTACCCTCCAGACATTAGACATGAA
LOC_Os02g09140
Os.53647.1.S1_s_at--322--1811Chr02:4693477..4693501 (25 bp)
ACCCTCCAGACATTAGACATGAATG
LOC_Os02g09140
Os.53647.1.S1_s_at--701--4351Chr02:4693482..4693506 (25 bp)
CCAGACATTAGACATGAATGGATGT
LOC_Os02g09140
Target Sequence 
GCAACCACCTGCCAAAAAGAGGAAATGATCAATGAGTAACAGCCCTACCTTACAAGCAAGAACGTGGCTCTGTTCATCCT
GTGCTTAGTGGTTCACTGGTTACTGGTTAGCAGGTAGGGGTTTTAGCTCGGTCGTCAGCCATAGCCTAGTTTGAGAACAG
GAAAAAAGAACACTTAGTTGTGCATGTACTATTTAAAAGATTCTTTTTTATCATGTCTCTCTTCTGATTTGCTACCGATT
TGTGTTTGCTTAGCCCTTTTTACATTGTTGTTGTACCCTCCAGACATTAGACATGAATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53647.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis