Browse Element(s) Details


OsAffx.14016.1.S1_at

Description tigr:9632.m02698
TID=OsAffx.14016.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2857011/11fatty acyl coA reductase, putative
LOC_Os04g286803/11Male sterility protein 2, putative
LOC_Os02g091001/11isoleucine-tRNA ligase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28530NANA4+16710335..16710568hypothetical protein
LOC_Os04g28540OsAffx.26212.1.S1_at11/114+16713090..16713362hypothetical protein
LOC_Os04g28550OsAffx.31777.2.S1_x_at1/114+16716060..16718649Transposable element protein, putative, Transposase_28
LOC_Os04g28560Os.1709.1.S1_x_at4/114+16720471..16726141retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g28570OsAffx.14016.1.S1_at11/114+16728217..16729885fatty acyl coA reductase, putative
LOC_Os04g28580Os.45774.1.S1_at11/114+16732222..16736189transposon protein, putative, unclassified, expressed
LOC_Os04g28590OsAffx.31018.2.S1_x_at11/114+16736900..16741362hypothetical protein
LOC_Os04g28590OsAffx.31018.3.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28590Os.50578.1.S1_x_at7/114+16736900..16741362hypothetical protein
LOC_Os04g28600NANA4+16744143..16745856Male sterility protein 2, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0009556biological_processmicrosporogenesis
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14016.1.S1_at--717--6492Chr04:16798813..16798837 (25 bp)
GATAGGAGCATACTCATCACCGGCT
LOC_Os04g28680
OsAffx.14016.1.S1_at--179--4972Chr04:16798820..16798844 (25 bp)
GCATACTCATCACCGGCTCTACTGG
LOC_Os04g28680
OsAffx.14016.1.S1_at--787--4812Chr04:16798835..16798858 (24 bp)
GCTCTACTGGCTTTCTGGCAAAAAC
LOC_Os04g28680
OsAffx.14016.1.S1_at--231--8491Chr04:16728279..16728479 (25 bp)
TGGCTTTCTGGCAAAAACCTTGTCC
LOC_Os04g28570
OsAffx.14016.1.S1_at--118--2432Chr04:16728472..16728492 (21 bp)
AAAACCTTGTCCATTCTATACTCTC
LOC_Os04g28570
OsAffx.14016.1.S1_at--367--7271Chr04:16728476..16728500 (25 bp)
GTCCATTCTATACTCTCTCGTGAAG
LOC_Os04g28570
OsAffx.14016.1.S1_at--1133--1031Chr04:16729588..16729612 (25 bp)
AGGTGAGGAAGCTCTACCAGCTGGT
LOC_Os04g28570
OsAffx.14016.1.S1_at--1004--9531Chr04:16729600..16729624 (25 bp)
TCTACCAGCTGGTGCGTGCTCCAGA
LOC_Os04g28570
OsAffx.14016.1.S1_at--29--6731Chr04:16729647..16729796 (25 bp)
GTTCTCACAGAGTTCATAGAAAAAT
LOC_Os04g28570
OsAffx.14016.1.S1_at--933--6931Chr04:16729797..16729821 (25 bp)
GTAGTGAACCATTTCGACAGCCATA
LOC_Os04g28570
OsAffx.14016.1.S1_at--93--1731Chr04:16729804..16729828 (25 bp)
ACCATTTCGACAGCCATACGACGGG
LOC_Os04g28570
Target Sequence 
GATAGGAGCATACTCATCACCGGCTCTACTGGCTTTCTGGCAAAAACCTTGTCCATTCTATACTCTCTCGTGAAGAAGAT
ACTGCGAGTTCAGCCGGAGGTGAGGAAGCTCTACCAGCTGGTGCGTGCTCCAGACGCCGCAGCTGCCGAGGAGCGTGTTC
TCACAGAGTTCATAGAAAAATGTAGTGAACCATTTCGACAGCCATACGACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14016.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis