Browse Element(s) Details


Os.13494.1.S1_at

Description gb:AU069824
DB_XREF= gi:5004649
DB_XREF=AU069824
CLONE=E3769_1A
TID=Os.13494.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13494 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein ref:NP_173021.1 (A.thaliana) inorganic pyrophosphatase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0915011/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13494.1.S1_at--129--4131Chr02:4694467..4694491 (25 bp)
CGCATCAAACACTGGCGGTGCTTGG
LOC_Os02g09150
Os.13494.1.S1_at--1113--10511Chr02:4694324..4694348 (25 bp)
TTCAGAGCATGCCAGGACCCTTGGT
LOC_Os02g09150
Os.13494.1.S1_at--57--1391Chr02:4694249..4694273 (25 bp)
AGACCCTCTCAAGGACACTTCAGGA
LOC_Os02g09150
Os.13494.1.S1_at--306--9611Chr02:4694199..4694223 (25 bp)
TCATGGCGGTCGAATCCCTCGTTTT
LOC_Os02g09150
Os.13494.1.S1_at--532--1911Chr02:4694154..4694178 (25 bp)
ACGGTGGTATCCTCTTCAAGTTGTT
LOC_Os02g09150
Os.13494.1.S1_at--220--9351Chr02:4694139..4694163 (25 bp)
TCAAGTTGTTCTAAACCGGCGACGT
LOC_Os02g09150
Os.13494.1.S1_at--1037--5691Chr02:4694066..4694090 (25 bp)
GACTATTTTGTCATGATTTGCTCCT
LOC_Os02g09150
Os.13494.1.S1_at--167--10731Chr02:4694049..4694073 (25 bp)
TTGCTCCTTGAGTTGATGACTCCAT
LOC_Os02g09150
Os.13494.1.S1_at--733--1711Chr02:4693982..4694006 (25 bp)
ACCTTGTGTTTTGATCCCAGAATTT
LOC_Os02g09150
Os.13494.1.S1_at--741--1471Chr02:4693964..4693988 (25 bp)
AGAATTTTCTCTGGTCCTCTTTAGC
LOC_Os02g09150
Os.13494.1.S1_at--920--10451Chr02:4693944..4693968 (25 bp)
TTAGCTTTTGTCTCCAGCTGCATAA
LOC_Os02g09150
Target Sequence 
CGCATCAAACACTGGCGGTGCTTGGGACAATGCAAAGAAATACATTGAGGCTGGAGCTTCAGAGCATGCCAGGACCCTTG
GTCCCAAAGGTTCCGATCCCCACAAGGCGGCCGTCATCGGTGACACCATCGGAGACCCTCTCAAGGACACTTCAGGACCC
TCTCTCAACATCCTCATCAAGCTCATGGCGGTCGAATCCCTCGTTTTCGCCCCCTTCTTCGCCACCCACGGTGGTATCCT
CTTCAAGTTGTTCTAAACCGGCGACGTTGGGTGTAACAAAGGCCATAGTTTTNNNTTNNNGGGGATGAGCAAAATATGTA
GACTATTTTGTCATGATTTGCTCCTTGAGTTGATGACTCCATTGTCTACTTGATTTCCCANTTTTTGTTCTAGTTCCNGG
TTCCNACCTTGTGTTTTGATCCCAGAATTTTCTCTGGTCCTCTTTAGCTTTTGTCTCCAGCTGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis