Browse Element(s) Details


Os.19861.1.S1_at

Description gb:AF306651.1
DB_XREF= gi:21304632
TID=Os.19861.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19861 (NCBI UniGene Cluster)
DEF=Oryza sativa pathogenesis-related protein 1 mRNA, complete cds.
PROD=pathogenesis-related protein 1
FL= gb:AF306651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0373011/11Pathogenesis-related protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03690Os.323.1.S1_at1/117+1498839..1499357Pathogenesis-related protein PRB1-2 precursor, putative
LOC_Os07g03700NANA7+1501764..1502583hypothetical protein
LOC_Os07g03710Os.323.1.S1_at11/117+1510342..1511256Pathogenesis-related protein PRB1-3 precursor, putative, expressed
LOC_Os07g03720OsAffx.19542.3.S1_x_at7/117+1515832..1520054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03730Os.19861.1.S1_at11/117+1521964..1522842Pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03740OsAffx.16187.1.S1_at1/117+1528205..1535233SCP-like extracellular protein
LOC_Os07g03750OsAffx.28250.1.S1_at11/117+1537779..1538297Pathogenesis-related protein PRMS precursor, putative
LOC_Os07g03760OsAffx.16069.1.S1_at11/117+1539463..1541976Mov34/MPN/PAD-1 family protein

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19861.1.S1_at--1050--1891Chr07:1522513..1522537 (25 bp)
ACGTCGACGGCGAATCTCCCTACTA
LOC_Os07g03730
Os.19861.1.S1_at--650--4111Chr07:1522523..1522547 (25 bp)
CGAATCTCCCTACTAGCTACTAGTA
LOC_Os07g03730
Os.19861.1.S1_at--769--10171Chr07:1522550..1522574 (25 bp)
TATACGTACGGCTACTTTATATACT
LOC_Os07g03730
Os.19861.1.S1_at--521--1911Chr07:1522557..1522581 (25 bp)
ACGGCTACTTTATATACTACTATCG
LOC_Os07g03730
Os.19861.1.S1_at--148--331Chr07:1522570..1522594 (25 bp)
ATACTACTATCGTACGCTGATCCGG
LOC_Os07g03730
Os.19861.1.S1_at--543--4411Chr07:1522594..1522618 (25 bp)
GCCAGCGCTGCAGGAGGACTACGTA
LOC_Os07g03730
Os.19861.1.S1_at--579--3751Chr07:1522601..1522625 (25 bp)
CTGCAGGAGGACTACGTACGTACGT
LOC_Os07g03730
Os.19861.1.S1_at--464--7431Chr07:1522624..1522648 (25 bp)
GTGTACGTAGTAAGTAGTCCTTGTT
LOC_Os07g03730
Os.19861.1.S1_at--727--172Chr07:1522667..1522691 (25 bp)
ATTTTTACACACACAGTTCGCATGC
LOC_Os07g03730
Os.19861.1.S1_at--28--6711Chr07:1522682..1522706 (25 bp)
GTTCGCATGCTTAATTATACGTGGA
LOC_Os07g03730
Os.19861.1.S1_at--800--1671Chr07:1522786..1522810 (25 bp)
AGCCGTCAGCCGTACGTGCGTGATA
LOC_Os07g03730
Target Sequence 
ACGTCGACGGCGAATCTCCCTACTAGCTACTAGTANGTATACGTACGGCTACTTTATATACTACTATCGTACGCTGATCC
GGCCAGCGCTGCAGGAGGACTACGTACGTACGTGTACGTAGTAAGTAGTCCTTGTTTTTACTGTATTTTACAATATTTTT
ACACACACAGTTCGCATGCTTAATTATACGTGGATGTACGNNNNTATAAGCATGTGTGCGTNTATATATNTNTNTATANN
TNTNNNNGAGNGNNTNNANNNGTNNNNNNNNNNNNNNAGCCGTCAGCCGTACGTGCGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis