Browse Element(s) Details


Os.19944.1.S1_at

Description gb:AK101710.1
DB_XREF= gi:32986919
TID=Os.19944.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-035-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060L17, full insert sequence.
FL= gb:AK101710.1 gb:AK060037.1 gb:AK104365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4356010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein
LOC_Os12g43540OsAffx.20105.1.S1_at11/1112+26981668..26982581hypothetical protein
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19944.1.S1_at--249--591Chr12:26992259..26992283 (25 bp)
ATGCCAACCGCCATCGAAGGGTACT
LOC_Os12g43560
Os.19944.1.S1_at--797--9651Chr12:26992218..26992242 (25 bp)
TCAGCTGGCTCTCATTCAGAGGTTC
LOC_Os12g43560
Os.19944.1.S1_at--165--7691Chr12:26992185..26992209 (25 bp)
GGGTTTCAACCTGGGTGAGCCTCCA
LOC_Os12g43560
Os.19944.1.S1_at--1138--4211Chr12:26992146..26992170 (25 bp)
CCGCTGCGCCGATTCATATATCATT
LOC_Os12g43560
Os.19944.1.S1_at--857--6711Chr12:26992080..26992104 (25 bp)
GTTCGTTTCGGTGATCAGTGACAGC
LOC_Os12g43560
Os.19944.1.S1_at--580--2311Chr12:26991856..26991880 (25 bp)
AAAGGAGTTGCCATCACTGATTTTA
LOC_Os12g43560
Os.19944.1.S1_at--611--6591Chr12:26991821..26991845 (25 bp)
GTTAATTCCCTAAGCGTGTATATGC
LOC_Os12g43560
Os.19944.1.S1_at--1018--3611Chr12:26991788..26991812 (25 bp)
CTTGTGAGCCACACATGCTTGGGAT
LOC_Os12g43560
Os.19944.1.S1_at--725--4931Chr12:26991772..26991796 (25 bp)
GCTTGGGATGGTTTCAGAACTTCTT
LOC_Os12g43560
Os.19944.1.S1_at--376--4851Chr12:26991730..26991754 (25 bp)
GCTACATCAGCAATTGTTCAGTTGA
LOC_Os12g43560
Os.19944.1.S1_at--466--10531Chr12:26991714..26991738 (25 bp)
TTCAGTTGATGCGTGTATCTTTACC
NONE
Target Sequence 
ATGCCAACCGCCATCGAAGGGTACTCGGAGCAGGANAGAGCTCAGCTGGCTCTCATTCAGAGGTTCCTCTCAGGGGGTTT
CAACCTGGGTGAGCCTCCAAGCCAGTCGCCGCCCCGCTGCGCCGATTCATATATCATTGACACCATGAAGGACCTTCACC
AGCTGCCATGGCTCGAGCGGTTCGTTTCGGTGATCAGTGACAGCTACAATGAAGATTACATCCAGTGAAAACAACATAGA
TAGCATTAAGAAAAAAAANGAATGGCACATACTGANTGAATTTCATTTGGAATAATATGTTTCCATGCCCCTCTTGAAAA
TCAATACAGGAAAAGTGAGATGGTTCTATACCTTCATGAGCTTTTCCTCTTGTACTCCCTTTTTTCCTGGTTTGGTGCAT
AAGCAAAAGGAGTTGCCATCACTGATTTTATTTATTTTTTGTTAATTCCCTAAGCGTGTATATGCTTGTTTTTCTTGTGA
GCCACACATGCTTGGGATGGTTTCAGAACTTCTTGATGTTGAATTGGATAAGCTACATCAGCAATTGTTCAGTTGATGCG
TGTATCTTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis