Browse Element(s) Details


Os.11938.1.S1_at

Description gb:AK067318.1
DB_XREF= gi:32977336
TID=Os.11938.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104A19, full insert sequence.
FL= gb:AK067318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g435907/11amine oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11938.1.S1_at--304--11Chr12:27019074..27019210 (25 bp)
AGTTTGGCCTAACAGGTGGTAACAT
LOC_Os12g43590
Os.11938.1.S1_at--31--6791Chr12:27019073..27019209 (25 bp)
GTTTGGCCTAACAGGTGGTAACATC
LOC_Os12g43590
Os.11938.1.S1_at--1108--10191Chr12:27019072..27019208 (25 bp)
TTTGGCCTAACAGGTGGTAACATCT
LOC_Os12g43590
Os.11938.1.S1_at--601--10871Chr12:27019071..27019207 (25 bp)
TTGGCCTAACAGGTGGTAACATCTT
LOC_Os12g43590
Os.11938.1.S1_at--643--8451Chr12:27019070..27019206 (25 bp)
TGGCCTAACAGGTGGTAACATCTTT
LOC_Os12g43590
Os.11938.1.S1_at--755--8391Chr12:27019069..27019205 (25 bp)
GGCCTAACAGGTGGTAACATCTTTC
LOC_Os12g43590
Os.11938.1.S1_at--992--4451Chr12:27019068..27019204 (25 bp)
GCCTAACAGGTGGTAACATCTTTCA
LOC_Os12g43590
Os.11938.1.S1_at--353--9871NONE
TTTTTAAAGGGATCAAATATCTTGG
NONE
Os.11938.1.S1_at--553--7811NONE
TTTTAAAGGGATCAAATATCTTGGA
NONE
Target Sequence 
AGTTTGGCCTAACAGGTGGTAACATCTTTCATGGCGCAATGGGCTTGGATTCACTTTTCCTCATGAGGCCTGCCAAGGGA
TGGTCAGATTACAGAACTCCAGTGAAGGGATTGTACCTCTGTGGCAGTGGTGCACACCCAGGAGGTGGGGTAATGGGCGC
TCCGGGCCGTAACGCTGCCTCCGTTGTTTTGGAAGATCTCAGGACAAAATAGATGGTGACCCGAGGAAACATGGAAACGG
TGATTGACACCAGGCTGGGTCTCGTTCAAGCACTGCACTGCAAAAGCAACCGAATTCCATCAGAATGAAAAGCACCTCAT
CAGACATCAGGTATAAACACCTGTGCCATGTGAGCTCACATATTAAGGAAATGGACAAACATTTCTTGAGGAGAGGCACA
TTTTCTGAATTAATTGGCCGACTTTCTAGTTTAGAGAGGGGAACATTCTTTGCCACCTGACCCTATTTCCCAGTATGAAG
ATATTTTGCATTTGTTCTCTTCTATTTGCAGCCTGTCTGAAATATATTATTCATCGGATTATCTACTTGATTGTAGGATA
AATTAAATATTTTTTTTAAAGGGATCAAATATCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis