Browse Element(s) Details


Os.28425.1.S1_x_at

Description gb:CB683011
DB_XREF= gi:29686736
DB_XREF=OSJNEf10N23.r
CLONE=OSJNEf10N23
TID=Os.28425.1
CNT=126
FEA=FLmRNA
TIER=Stack
STK=27
UG=Os.28425 (NCBI UniGene Cluster)
UG_TITLE=MRNA for glycine-rich RNA-binding protein (OsGRP1)
FL= gb:AK073614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4360011/11Glycine-rich RNA-binding protein GRP1A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28425.1.S1_x_at--239--451Chr12:27027438..27027462 (25 bp)
ATCTAGTTTGTGTTACTGTGTGGTT
LOC_Os12g43600
Os.28425.1.S1_x_at--555--3711Chr12:27027440..27027464 (25 bp)
CTAGTTTGTGTTACTGTGTGGTTGC
LOC_Os12g43600
Os.28425.1.S1_x_at--153--1211Chr12:27027442..27027466 (25 bp)
AGTTTGTGTTACTGTGTGGTTGCCC
LOC_Os12g43600
Os.28425.1.S1_x_at--268--6871Chr12:27027443..27027467 (25 bp)
GTTTGTGTTACTGTGTGGTTGCCCA
LOC_Os12g43600
Os.28425.1.S1_x_at--357--10251Chr12:27027444..27027468 (25 bp)
TTTGTGTTACTGTGTGGTTGCCCAT
LOC_Os12g43600
Os.28425.1.S1_x_at--1082--8651Chr12:27027446..27027470 (25 bp)
TGTGTTACTGTGTGGTTGCCCATCT
LOC_Os12g43600
Os.28425.1.S1_x_at--159--7431Chr12:27027447..27027471 (25 bp)
GTGTTACTGTGTGGTTGCCCATCTG
LOC_Os12g43600
Os.28425.1.S1_x_at--370--8791Chr12:27027448..27027472 (25 bp)
TGTTACTGTGTGGTTGCCCATCTGT
LOC_Os12g43600
Os.28425.1.S1_x_at--815--6771Chr12:27027449..27027473 (25 bp)
GTTACTGTGTGGTTGCCCATCTGTG
LOC_Os12g43600
Os.28425.1.S1_x_at--12--10471Chr12:27027450..27027474 (25 bp)
TTACTGTGTGGTTGCCCATCTGTGT
LOC_Os12g43600
Os.28425.1.S1_x_at--195--9931Chr12:27027451..27027475 (25 bp)
TACTGTGTGGTTGCCCATCTGTGTT
LOC_Os12g43600
Target Sequence 
ATCTAGTTTGTGTTACTGTGTGGTTGCCCATCTGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28425.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis