Browse Element(s) Details


Os.20187.2.S1_at

Description gb:AK103941.1
DB_XREF= gi:32989150
TID=Os.20187.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.33 (P0031D02.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G09, full insert sequence.
FL= gb:AK103941.1 gb:AK072321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6101010/11Nodulin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60980NANA1+35606726..35613447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g60990NANA1+35616360..35617745retrotransposon protein, putative, unclassified
LOC_Os01g61000NANA1+35618377..35621612transposon protein, putative, unclassified
LOC_Os01g61010Os.20187.1.S1_at11/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61010Os.20187.2.S1_at10/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20187.2.S1_at--579--3131Chr01:35630637..35630661 (25 bp)
CAATTTTGCCGGGAGGCTACCTGTA
LOC_Os01g61010
Os.20187.2.S1_at--1152--4831Chr01:35630622..35630646 (25 bp)
GCTACCTGTAAGGATACCGTCCTGC
LOC_Os01g61010
Os.20187.2.S1_at--852--4531Chr01:35630594..35630618 (25 bp)
GCCCGCTTAGCTAACCTTGTGTAGG
LOC_Os01g61010
Os.20187.2.S1_at--174--7411Chr01:35630576..35630600 (25 bp)
GTGTAGGGTGCTAGAACTTTCTTAC
LOC_Os01g61010
Os.20187.2.S1_at--297--2531Chr01:35630562..35630586 (25 bp)
AACTTTCTTACACCTCTCAGAGGAG
LOC_Os01g61010
Os.20187.2.S1_at--476--8411Chr01:35630538..35630562 (25 bp)
GGCCTCTTCTTAATTTAACGACCAT
LOC_Os01g61010
Os.20187.2.S1_at--374--5851Chr01:35630519..35630543 (25 bp)
GACCATACACGAAAGCATCAGCCAT
LOC_Os01g61010
Os.20187.2.S1_at--1028--7851Chr01:35630427..35630451 (25 bp)
GGTTTTCTTGACTGATTATCCCACG
LOC_Os01g61010
Os.20187.2.S1_at--840--10231Chr01:35630364..35630388 (25 bp)
TATTGTGCAGGCTGATCACCTTGTT
LOC_Os01g61010
Os.20187.2.S1_at--484--6451Chr01:35630351..35630375 (25 bp)
GATCACCTTGTTTTCTCTGCATATA
LOC_Os01g61010
Os.20187.2.S1_at--848--10531Chr01:35630290..35630314 (25 bp)
TTCAGGTCTTGATCATATTGGCTAA
NONE
Target Sequence 
CAATTTTGCCGGGAGGCTACCTGTAAGGATACCGTCCTGCCTCGCCCGCTTAGCTAACCTTGTGTAGGGTGCTAGAACTT
TCTTACACCTCTCAGAGGAGGCCTCTTCTTAATTTAACGACCATACACGAAAGCATCAGCCATTAGGCGATGTAATTAAT
TAGGTTTTGTTTCTTTCCACCACCTTTTTCTTTCTTTCTTTCTTTCCTTTGGTTTTCTTGACTGATTATCCCACGGGGGG
ATACAGACAAAAGGTTGGAGCCTGATCAGTAGATATTGTGCAGGCTGATCACCTTGTTTTCTCTGCATATATTATATATG
CAATCATATACGAGTGGTTAAGGGNAATTCAGGTCTTGATCATATTGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20187.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis