Browse Element(s) Details


Os.10716.1.S1_at

Description gb:AK101175.1
DB_XREF= gi:32986384
TID=Os.10716.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E11.13 (P0439E11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029A05, full insert sequence.
FL= gb:AK101175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6106011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61010Os.20187.1.S1_at11/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61010Os.20187.2.S1_at10/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10716.1.S1_at--700--10791Chr01:35657669..35657693 (25 bp)
TTGTCGGTGACATAAAACTCGGTAT
LOC_Os01g61060
Os.10716.1.S1_at--255--851Chr01:35657692..35657716 (25 bp)
ATGGACGGTGAGATGATCCCACCCG
LOC_Os01g61060
Os.10716.1.S1_at--316--1812Chr03:11422822..11422842 (21 bp)
ACCCGCGCAGGCAGTGATGGAGACC
NONE
Os.10716.1.S1_at--157--6251Chr01:35657727..35657751 (25 bp)
GATGGAGACCAGTGGCGATACGCAA
LOC_Os01g61060
Os.10716.1.S1_at--546--9131Chr01:35657769..35657793 (25 bp)
TGCGGCAAATGGTGACAACGAGCTC
LOC_Os01g61060
Os.10716.1.S1_at--547--1571Chr01:35657789..35657813 (25 bp)
AGCTCAGTAGCTAAACCCAAGGGTG
LOC_Os01g61060
Os.10716.1.S1_at--663--2371Chr01:35657801..35657825 (25 bp)
AAACCCAAGGGTGATTATCTGATTG
LOC_Os01g61060
Os.10716.1.S1_at--595--8871Chr01:35657824..35657848 (25 bp)
TGATGTTATGGTGTGCAGAAGCTGC
LOC_Os01g61060
Os.10716.1.S1_at--335--31Chr01:35657875..35657899 (25 bp)
ATTGGCACCATCTTTCCAGCATTGT
LOC_Os01g61060
Os.10716.1.S1_at--219--3411Chr01:35657891..35657915 (25 bp)
CAGCATTGTGCTCTTGCTTTGTCAT
LOC_Os01g61060
Os.10716.1.S1_at--319--3751Chr01:35657922..35657946 (25 bp)
CTCAGCTACTGTTTTCGTGTGGCAA
LOC_Os01g61060
Target Sequence 
TTGTCGGTGACATAAAACTCGGTATGGACGGTGAGATGATCCCACCCGCGCAGGCAGTGATGGAGACCAGTGGCGATACG
CAAGGCAGTGGTGCAGACGTTGCGGCAAATGGTGACAACGAGCTCAGTAGCTAAACCCAAGGGTGATTATCTGATTGATG
TTATGGTGTGCAGAAGCTGCGGGGGAATCNATCTTGTTTTTTGGGGATTGGCACCATCTTTCCAGCATTGTGCTCTTGCT
TTGTCATNTTCTGCTCAGCTACTGTTTTCGTGTGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis