Browse Element(s) Details


Os.20361.1.A1_at

Description gb:AK120902.1
DB_XREF= gi:37990525
TID=Os.20361.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030N23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030N23, full insert sequence.
FL= gb:AK120902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3130011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g31310Os.51627.1.A1_at11/119+18824515..18825255acetyltransferase, GNAT family protein, expressed
LOC_Os09g31319OsAffx.8598.1.S1_at1/119+18831048..18832707NA
LOC_Os09g31330NANA9+18836405..18837157hypothetical protein
LOC_Os09g31340NANA9+18839526..18840120hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20361.1.A1_at--738--3771Chr09:18815434..18815458 (25 bp)
CTCGGCGAGCAAGCAGAAGCACTTC
LOC_Os09g31300
Os.20361.1.A1_at--656--5111Chr09:18815452..18815476 (25 bp)
GCACTTCGCCGGCTAAATCAATCAA
LOC_Os09g31300
Os.20361.1.A1_at--555--691Chr09:18815491..18815515 (25 bp)
ATGACCGGTGCAGCAGTGCGCAACA
LOC_Os09g31300
Os.20361.1.A1_at--363--3851Chr09:18815551..18815575 (25 bp)
CTGCACCGGCAGTTTTTCTAAGCTT
LOC_Os09g31300
Os.20361.1.A1_at--65--3651Chr09:18815573..18815597 (25 bp)
CTTCGTTTCCTTCTTTGCTGATGAA
LOC_Os09g31300
Os.20361.1.A1_at--50--671Chr09:18815593..18815617 (25 bp)
ATGAATTCGCTGGTCTATCTGGTAA
LOC_Os09g31300
Os.20361.1.A1_at--228--3471Chr09:18815647..18815671 (25 bp)
CAGTGGCATGCATTCTTCAGAGTTC
LOC_Os09g31300
Os.20361.1.A1_at--816--10031Chr09:18815792..18815816 (25 bp)
TAGATGGTTGTCTCATCTCTGTTTG
LOC_Os09g31300
Os.20361.1.A1_at--1022--6851Chr09:18815812..18815836 (25 bp)
GTTTGTCATAGTACACACCAAGTGC
LOC_Os09g31300
Os.20361.1.A1_at--467--3231Chr09:18815836..18815860 (25 bp)
CAAGTTGCAGCTGTGTCTGCTTGCA
LOC_Os09g31300
Os.20361.1.A1_at--92--3711Chr09:18815947..18815971 (25 bp)
CTACACCCTGTTTTTGTGAAGTACA
LOC_Os09g31300
Target Sequence 
CTCGGCGAGCAAGCAGAAGCACTTCGCCGGCTAAATCAATCAAGTCAATCAATCGCCATGACCGGTGCAGCAGTGCGCAA
CACACGAACGGCCGCAAAAGGCATGCAGCAGAAGCATCTGCACCGGCAGTTTTTCTAAGCTTCGTTTCCTTCTTTGCTGA
TGAATTCGCTGGTCTATCTGGTAAATTGAACATGAGGGCATTGGATTTTGGAGCAGTGGCATGCATTCTTCAGAGTTCAC
AAAGATGATGGGTTGGGGTCCCACATGGTAGTGGTAGACTACTGTAGCTGCAAAGCTTGATTAATTAATTAGCCTGTTCT
TTTGATAATGAAGGAGAGGAGAGTAACTCACAAGTGTATAGATGGTTGTCTCATCTCTGTTTGTCATAGTACACACCAAG
TGCAAGTTGCAGCTGTGTCTGCTTGCAAGAATGCATGCCCATGTACATTGCATCCCCCNTTGCTTGACNAATGACACATC
CAGACAGCCTCCNNANNNNNNNNNNNNNNNNNNCTACACCCTGTTTTTGTGAAGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20361.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis