Browse Element(s) Details


Os.20600.1.S1_at

Description gb:AK067604.1
DB_XREF= gi:32977622
TID=Os.20600.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112B07, full insert sequence.
FL= gb:AK067604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5109011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20600.1.S1_at--109--4311Chr03:29162503..29162527 (25 bp)
CCTAGAAGAAGCACCTTTAAGGCTA
LOC_Os03g51090
Os.20600.1.S1_at--621--5371Chr03:29162507..29162531 (25 bp)
GAAGAAGCACCTTTAAGGCTAGTTT
LOC_Os03g51090
Os.20600.1.S1_at--687--7351Chr03:29162621..29162645 (25 bp)
GTGAAGGTTAAGTTGCTTCATATTT
LOC_Os03g51090
Os.20600.1.S1_at--187--10551Chr03:29162637..29162661 (25 bp)
TTCATATTTGTTTTGTACCAACCTT
LOC_Os03g51090
Os.20600.1.S1_at--1057--10231Chr03:29162643..29162664 (22 bp)
TTTGTTTTGTACCAACCTTTATATG
LOC_Os03g51090
Os.20600.1.S1_at--435--8771Chr03:29162645..29162670 (25 bp)
TGTTTTGTACCAACCTTTATATGTT
LOC_Os03g51090
Os.20600.1.S1_at--374--10231Chr03:29162648..29162673 (25 bp)
TTTGTACCAACCTTTATATGTTTAT
LOC_Os03g51090
Os.20600.1.S1_at--748--2251Chr03:29162676..29162700 (25 bp)
AAATTTCTGCTATGTGAAAGTCTAA
LOC_Os03g51090
Os.20600.1.S1_at--132--7351Chr03:29162689..29162713 (25 bp)
GTGAAAGTCTAAACAACAGGTCTTG
LOC_Os03g51090
Os.20600.1.S1_at--788--7091Chr03:29162695..29162719 (25 bp)
GTCTAAACAACAGGTCTTGTGCGGT
LOC_Os03g51090
Os.20600.1.S1_at--697--9811Chr03:29162698..29162722 (25 bp)
TAAACAACAGGTCTTGTGCGGTAGC
LOC_Os03g51090
Target Sequence 
CCTAGAAGAAGCACCTTTAAGGCTAGTTTTTTNTTTATGNATATTANAGTNGTGTATGTTTCTTCTTGTTCTGTGCNATT
TATATGTAAAATTATGATTGGAGAACTAAAGTGTGAATGTGAAGGTTAAGTTGCTTCATATTTGTTTTGTACCAACCTTT
ATATGTTTATTTAAATTTCTGCTATGTGAAAGTCTAAACAACAGGTCTTGTGCGGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis