Browse Element(s) Details


Os.49785.1.S1_at

Description gb:AK111560.1
DB_XREF= gi:37988223
TID=Os.49785.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060F16, full insert sequence.
FL= gb:AK111560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5111011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51120OsAffx.13041.1.S1_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51120OsAffx.13041.1.S1_x_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49785.1.S1_at--735--4711Chr03:29188221..29188245 (25 bp)
GCTGGCCTGTTTGCAATTGGCAGAC
LOC_Os03g51110
Os.49785.1.S1_at--1107--8011Chr03:29188259..29188283 (25 bp)
GGAGGATTATTGTTCATCTACTAAT
LOC_Os03g51110
Os.49785.1.S1_at--606--7731Chr03:29188446..29188470 (25 bp)
GGTGGAGTTTTACGACTTCCTCCAG
LOC_Os03g51110
Os.49785.1.S1_at--562--10671Chr03:29188462..29188486 (25 bp)
TTCCTCCAGGTGAATGCGAGCTCGA
LOC_Os03g51110
Os.49785.1.S1_at--304--611Chr03:29188475..29188499 (25 bp)
ATGCGAGCTCGAGCGACACCAAGTG
LOC_Os03g51110
Os.49785.1.S1_at--901--3371Chr03:29188491..29188515 (25 bp)
CACCAAGTGCGGCTCGAGCATTGAG
LOC_Os03g51110
Os.49785.1.S1_at--115--6171Chr03:29188579..29188603 (25 bp)
GAGGTTGGGACTACTTCTCGTCAAT
LOC_Os03g51110
Os.49785.1.S1_at--4--5071Chr03:29188660..29188684 (25 bp)
GCAGCTTGTAATGCATGCTTTGCAG
LOC_Os03g51110
Os.49785.1.S1_at--1010--10731Chr03:29188679..29188703 (25 bp)
TTGCAGTTTGCATGCTGTGAAAGGA
LOC_Os03g51110
Os.49785.1.S1_at--480--231Chr03:29188823..29188847 (25 bp)
ATATATCTGTTCGATCGTCCATCCT
LOC_Os03g51110
Os.49785.1.S1_at--119--9231Chr03:29188840..29188864 (25 bp)
TCCATCCTCGGATCGTACATGTGAA
LOC_Os03g51110
Target Sequence 
GCTGGCCTGTTTGCAATTGGCAGACACCATAACAGCAAGGAGGATTATTGTTCATCTACTAATGAAGATACGAGTAAATC
GGTGGAGTTTTACGACTTCCTCCAGGTGAATGCGAGCTCGAGCGACACCAAGTGCGGCTCGAGCATTGAGGAGCAAGAGG
ATAACCGGGATGATGATCAAGCTGAAGGGCAGGTGCAGCTCATAGATTTCATGGAGGTTGGGACTACTTCTCGTCAATGA
ATTTATCCACATACATATGTGTATTTAACTAGGGGATCAAATGATCCAAAACATGCAGCTTGTAATGCATGCTTTGCAGT
TTGCATGCTGTGAAAGGAGAGGGATGCTGATAGAAATCTAACACCAAAAATTAAAGTATATACTTATAGAGGAAGAGAAA
TGCGATGACGTACGTATATATATGACATGTAATTTATTGATGTAATTAAACACACATATATATCTGTTCGATCGTCCATC
CTCGGATCGTACATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis