Browse Element(s) Details


OsAffx.25676.1.S1_x_at

Description tigr:9631.m04996
TID=OsAffx.25676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to translational activator (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5114011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51120OsAffx.13041.1.S1_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51120OsAffx.13041.1.S1_x_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25676.1.S1_x_at--750--10531Chr03:29221468..29221492 (25 bp)
TTCTGACCTGGTGCAAACCTTGTTG
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--362--8791Chr03:29221565..29221589 (25 bp)
TGTTCATCTAAGTTGTGCCGTTCGA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--710--6711Chr03:29221584..29221608 (25 bp)
GTTCGATGTCATTTCCTTCTATTGT
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--96--1311Chr03:29221633..29221736 (25 bp)
AGATGACAAGTTCCCTGTTCGTGAA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--386--6211Chr03:29221757..29221781 (25 bp)
GAGGCTACTCTGTTACCAGTTGCAG
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--224--5031Chr03:29221778..29221802 (25 bp)
GCAGTCTGAAGCTAGCACCTTGCAA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--455--2051Chr03:29221802..29221826 (25 bp)
ACTTATCCAGTTACTTGCCTTGGCA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--448--9191Chr03:29221817..29221841 (25 bp)
TGCCTTGGCATTGCGCGATGATTCA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--470--8711Chr03:29221864..29221888 (25 bp)
TGTCTCGTCTCAAAGCTGCTGCAAA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--481--9951Chr03:29222007..29222031 (25 bp)
TACGCATCTCTCAATATTGGGCCCA
LOC_Os03g51140
OsAffx.25676.1.S1_x_at--271--4551Chr03:29222092..29222116 (25 bp)
GCCCTTCATGTTTTCCAGTTGACAA
LOC_Os03g51140
Target Sequence 
TTCTGACCTGGTGCAAACCTTGTTGAATATGGGAACCTTACCAGACTGGTGTACCAGGCATGGTGCTTTGTTAACATTCT
GTTCGATATCGATGCATTGTTCATCTAAGTTGTGCCGTTCGATGTCATTTCCTTCTATTGTTGATCTTCTGAAAGATTCT
CTGAAAGATGACAAGTTCCCTGTTCGTGAAGCCTCGACAAAAACTTTGGGGAGGCTACTCTGTTACCAGTTGCAGTCTGA
AGCTAGCACCTTGCAACTTATCCAGTTACTTGCCTTGGCATTGCGCGATGATTCAAGTGAAGTTCGAAGGAGATCTTTGT
CTCGTCTCAAAGCTGCTGCAAAGATAAATAACCCAGCCCTTGCTACGCATCTCTCAATATTGGGCCCAGCAATAGCTGAA
GCTTTGAAGGATACGAACACGCCTGTGCGTGTAGCAGCAGAGCGTTGTGCCCTTCATGTTTTCCAGTTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25676.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis