Browse Element(s) Details


Os.51928.1.S1_at

Description gb:AK064299.1
DB_XREF= gi:32974317
TID=Os.51928.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51928 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-A07, full insert sequence.
FL= gb:AK064299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5120011/11Histone H2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51928.1.S1_at--387--4431Chr03:29242572..29242596 (25 bp)
GCCTCCCAGGAGTTTTGAGCGGGTT
LOC_Os03g51200
Os.51928.1.S1_at--1153--1191Chr03:29242582..29242606 (25 bp)
AGTTTTGAGCGGGTTTTTCTCATCG
LOC_Os03g51200
Os.51928.1.S1_at--490--10251Chr03:29242585..29242609 (25 bp)
TTTGAGCGGGTTTTTCTCATCGGGT
LOC_Os03g51200
Os.51928.1.S1_at--961--5871Chr03:29242588..29242612 (25 bp)
GAGCGGGTTTTTCTCATCGGGTGGA
LOC_Os03g51200
Os.51928.1.S1_at--993--6391Chr03:29242650..29242674 (25 bp)
GATCGTTCATGCGATGCTTTTTTTT
LOC_Os03g51200
Os.51928.1.S1_at--1120--7671Chr03:29242697..29242721 (25 bp)
GGGTGTTTGAACTTCGTGGCATGTA
LOC_Os03g51200
Os.51928.1.S1_at--636--7431Chr03:29242699..29242723 (25 bp)
GTGTTTGAACTTCGTGGCATGTAAA
LOC_Os03g51200
Os.51928.1.S1_at--127--6831Chr03:29242701..29242725 (25 bp)
GTTTGAACTTCGTGGCATGTAAAAA
LOC_Os03g51200
Os.51928.1.S1_at--1039--5451Chr03:29242705..29242729 (25 bp)
GAACTTCGTGGCATGTAAAAAACTC
LOC_Os03g51200
Os.51928.1.S1_at--522--7511Chr03:29242712..29242736 (25 bp)
GTGGCATGTAAAAAACTCTGGGTTC
LOC_Os03g51200
Os.51928.1.S1_at--915--4971Chr03:29242715..29242739 (25 bp)
GCATGTAAAAAACTCTGGGTTCATT
LOC_Os03g51200
Target Sequence 
GCCTCCCAGGAGTTTTGAGCGGGTTTTTCTCATCGGGTGGANGAAGAGGGGATCNGCCCTTTCGCCAATCTCTTGTCTNG
GATCGTTCATGCGATGCTTTTTTTTNGCNCATGTTTCCNGTGTGGTTGGGGGTGTTTGAACTTCGTGGCATGTAAAAAAC
TCTGGGTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis