Browse Element(s) Details


Os.49167.1.S1_at

Description gb:AK102605.1
DB_XREF= gi:32987814
TID=Os.49167.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098O18, full insert sequence.
FL= gb:AK102605.1 gb:AK106139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5116010/11Fb27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49167.1.S1_at--475--9851NONE
TAAATTGAGCTTTCATGCACACCCC
NONE
Os.49167.1.S1_at--868--5751Chr03:29226483..29226507 (25 bp)
GACGGTGTTGATTTCGGCATGGACT
LOC_Os03g51160
Os.49167.1.S1_at--865--831Chr03:29226465..29226489 (25 bp)
ATGGACTTCCGTCTCCGAGAAGAGT
LOC_Os03g51160
Os.49167.1.S1_at--1014--6571Chr03:29226408..29226432 (25 bp)
GATTCTGTACTCATACGCCTGTTTA
LOC_Os03g51160
Os.49167.1.S1_at--677--3131Chr03:29226381..29226405 (25 bp)
AATTCGTTTCCCATAACTTGCTAGC
LOC_Os03g51160
Os.49167.1.S1_at--328--4851Chr03:29226362..29226386 (25 bp)
GCTAGCCAGGTATTCGCACACATGA
LOC_Os03g51160
Os.49167.1.S1_at--305--5471Chr03:29226275..29226299 (25 bp)
GAACTTGACCACGTGAAGCCAGGTT
LOC_Os03g51160
Os.49167.1.S1_at--669--2651Chr03:29226260..29226284 (25 bp)
AAGCCAGGTTGCTGCGTGTCAATGA
LOC_Os03g51160
Os.49167.1.S1_at--1065--7071Chr03:29226243..29226267 (25 bp)
GTCAATGAAACCGTGCAGCCAGCTA
LOC_Os03g51160
Os.49167.1.S1_at--1007--3711Chr03:29226208..29226232 (25 bp)
CTAGCCTTTTGTCTCTTGTGTCAAA
LOC_Os03g51160
Os.49167.1.S1_at--534--3631Chr03:29226153..29226177 (25 bp)
CTTGCTCTGTTGTGTGGACTTGTGA
LOC_Os03g51160
Target Sequence 
TAAATTGAGCTTTCATGCACACCCCCATGACCGTGACGGTGTTGATTTCGGCATGGACTTCCGTCTCCGAGAAGAGTGAT
TACGATGGAAACGGGGAGAAATGCCATGAGATTCTGTACTCATACGCCTGTTTACAAATTCGTTTCCCATAACTTGCTAG
CCAGGTATTCGCACACATGACCTGCAAACTGATGGAAGCTAGACTTTTTATTTTTATTATTCCATAGAGCAAGCAGTGAA
GTGAACTTGACCACGTGAAGCCAGGTTGCTGCGTGTCAATGAAACCGTGCAGCCAGCTATCGAACTCTTCTAGCCTTTTG
TCTCTTGTGTCAAAGATAACATTGTTGCCATGATGCCATCCCCTCTTGCTCTGTTGTGTGGACTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis