Browse Element(s) Details


Os.56745.1.S1_at

Description gb:AK110368.1
DB_XREF= gi:32995577
TID=Os.56745.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-165-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-165-B05, full insert sequence.
FL= gb:AK110368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g511401/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51120OsAffx.13041.1.S1_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51120OsAffx.13041.1.S1_x_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56745.1.S1_at--904--6091NONE
GAGTCGAACTCGTACCATCTTTGGT
NONE
Os.56745.1.S1_at--377--351NONE
ATAACCGAAACTCCTGCACATGTGT
NONE
Os.56745.1.S1_at--16--6571NONE
GATTCGTCCCTTTGTACATTGGCGA
NONE
Os.56745.1.S1_at--115--171NONE
ATTTTGCATATACCTCTTCGATTCC
NONE
Os.56745.1.S1_at--1086--6771Chr03:29213446..29213465 (20 bp)
GTTACCTCTTCTCGACAATGTTTTT
LOC_Os03g51140
Os.56745.1.S1_at--729--7091NONE
GTCACAATTATCGATACCTGCCTGG
NONE
Os.56745.1.S1_at--176--7131NONE
GTCATCTCGACACACATTTCTTTTT
NONE
Os.56745.1.S1_at--119--731NONE
ATGATTCTTACATCTCCTGGTCTGA
NONE
Os.56745.1.S1_at--156--3911NONE
CTGGTCTGAGCATCTGTTCTTGTAA
NONE
Os.56745.1.S1_at--386--4651NONE
GCGTCTTGCACATAATCTGGTTCGA
NONE
Os.56745.1.S1_at--323--1911NONE
ACGTGCCCCTGTAATGAGTGCGGTA
NONE
Target Sequence 
GAGTCGAACTCGTACCATCTTTGGTCGCAAAAAGAGTAACACCGCTTCCTCGACATAACCGAAACTCCTGCACATGTGTC
TACGATTCGTCCCTTTGTACATTGGCGATGGCGTCCCTGGTTTTGCGACGGGCTCCTCGATTTTGCATATACCTCTTCGA
TTCCCGCGTTACCTCTTCTCGACAATGTTTTTATGTTCGGCGGTCACAATTATCGATACCTGCCTGGCGCATGGCTTGGC
ATTGCCATATTCCCGTCATCTCGACACACATTTCTTTTTGCTTTTGGTCGAAAGCTATCTTTCCTATGTTTATGATTCTT
ACATCTCCTGGTCTGAGCATCTGTTCTTGTAACGCAAGCATCAACGATAAGCTGCGTCTTGCACATAATCTGGTTCGATA
CCTATGTATCGATTGGGCTACGACGTGCCCCTGTAATGAGTGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56745.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis