Browse Element(s) Details


Os.15153.1.S1_at

Description gb:AK065408.1
DB_XREF= gi:32975426
TID=Os.15153.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013005O01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013005O01, full insert sequence.
FL= gb:AK058251.1 gb:AK065408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5114011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51120OsAffx.13041.1.S1_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51120OsAffx.13041.1.S1_x_at7/113+29193207..29193623transposon protein, putative, unclassified
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15153.1.S1_at--245--9831Chr03:29222542..29222566 (25 bp)
TAAAACGCATTACTCACTGCAGCCA
LOC_Os03g51140
Os.15153.1.S1_at--1028--1951Chr03:29222557..29222581 (25 bp)
ACTGCAGCCACTCGGACCAAATTTT
LOC_Os03g51140
Os.15153.1.S1_at--36--1671Chr03:29222562..29222586 (25 bp)
AGCCACTCGGACCAAATTTTGCTTC
LOC_Os03g51140
Os.15153.1.S1_at--157--171Chr03:29222577..29222601 (25 bp)
ATTTTGCTTCTGTTTGTTGTCCACC
LOC_Os03g51140
Os.15153.1.S1_at--206--6631Chr03:29222592..29222616 (25 bp)
GTTGTCCACCCATATATGATCTTTT
LOC_Os03g51140
Os.15153.1.S1_at--97--8791Chr03:29222608..29222632 (25 bp)
TGATCTTTTCTTCATAGTTGTGGAA
LOC_Os03g51140
Os.15153.1.S1_at--638--8152Chr03:29222629..29222653 (25 bp)
GGAAATATGGTCATTTTTCTCCTCC
LOC_Os03g51140
Os.15153.1.S1_at--277--3811Chr03:29222647..29222671 (25 bp)
CTCCTCCTGGCCATTGGTATAAACA
LOC_Os03g51140
Os.15153.1.S1_at--888--10011Chr03:29222693..29222717 (25 bp)
TAGCAGAGGAAGACAGTTCGGCGTT
LOC_Os03g51140
Os.15153.1.S1_at--698--5651Chr03:29222704..29222728 (25 bp)
GACAGTTCGGCGTTGTTCATATTCT
LOC_Os03g51140
Os.15153.1.S1_at--500--10471Chr03:29222728..29222752 (25 bp)
TTCTTACTAGAAATCAACGTTGTTC
LOC_Os03g51140
Target Sequence 
TAAAACGCATTACTCACTGCAGCCACTCGGACCAAATTTTGCTTCTGTTTGTTGTCCACCCATATATGATCTTTTCTTCA
TAGTTGTGGAAATATGGTCATTTTTCTCCTCCTGGCCATTGGTATAAACACNCTTTTTTGACAAAATACAGTAGCAGAGG
AAGACAGTTCGGCGTTGTTCATATTCTTCTTACTAGAAATCAACGTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis