Browse Element(s) Details


OsAffx.3572.1.S1_at

Description tigr:9631.m05000
TID=OsAffx.3572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51140Os.15153.1.S1_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140OsAffx.25676.1.S1_x_at11/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51140Os.56745.1.S1_at1/113+29211091..29222848HEAT repeat family protein, expressed
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3572.1.S1_at--49--4151Chr03:29232547..29232571 (25 bp)
CGCGGCACGTGGAGAAGACGCACCA
LOC_Os03g51170
OsAffx.3572.1.S1_at--204--8071Chr03:29232557..29232581 (25 bp)
GGAGAAGACGCACCACATCAGGATG
LOC_Os03g51170
OsAffx.3572.1.S1_at--613--5791Chr03:29232563..29232587 (25 bp)
GACGCACCACATCAGGATGGAGTAC
LOC_Os03g51170
OsAffx.3572.1.S1_at--113--9951Chr03:29232585..29232609 (25 bp)
TACGAGGAGAGGGTGCTCCGCCGGT
LOC_Os03g51170
OsAffx.3572.1.S1_at--725--7891Chr03:29232607..29232631 (25 bp)
GGTTCGTCTTGCACGGCTACGTCGA
LOC_Os03g51170
OsAffx.3572.1.S1_at--942--4751Chr03:29232622..29232646 (25 bp)
GCTACGTCGACGTCACCGATAACGA
LOC_Os03g51170
OsAffx.3572.1.S1_at--1040--9671Chr03:29232634..29232658 (25 bp)
TCACCGATAACGAGGACGATCAGGT
LOC_Os03g51170
OsAffx.3572.1.S1_at--183--871Chr03:29232679..29232703 (25 bp)
ATGGCGACGATAAGGATGATCCACC
LOC_Os03g51170
OsAffx.3572.1.S1_at--156--6471Chr03:29232687..29232711 (25 bp)
GATAAGGATGATCCACCGGCCTCCT
LOC_Os03g51170
OsAffx.3572.1.S1_at--960--3731Chr03:29232723..29232747 (25 bp)
CTAAGCTCGGCTCCAGTGGATACAG
LOC_Os03g51170
OsAffx.3572.1.S1_at--369--1591Chr03:29232726..29232750 (25 bp)
AGCTCGGCTCCAGTGGATACAGTGG
LOC_Os03g51170
Target Sequence 
CGCGGCACGTGGAGAAGACGCACCACATCAGGATGGAGTACGAGGAGAGGGTGCTCCGCCGGTTCGTCTTGCACGGCTAC
GTCGACGTCACCGATAACGAGGACGATCAGGTGGGAGACGACGACGACGACGATGGCGACGATAAGGATGATCCACCGGC
CTCCTTGATCCGTCCCCTAAGCTCGGCTCCAGTGGATACAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis