Browse Element(s) Details


OsAffx.25677.1.S1_x_at

Description tigr:9631.m05005
TID=OsAffx.25677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5122011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51150Os.8247.1.S1_at10/113+29222890..29225199pre-mRNA processing protein PRP39, putative, expressed
LOC_Os03g51160Os.49167.1.S1_at10/113+29226134..29229168Fb27, putative, expressed
LOC_Os03g51170OsAffx.3572.1.S1_at11/113+29232510..29232788expressed protein
LOC_Os03g51180Os.54762.1.S1_at11/113+29233431..29237025expressed protein
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25677.1.S1_x_at--229--7352Chr09:12236352..12236739 (25 bp)
GTGAAAACTGTGAACTTCAACTCTG
NONE
OsAffx.25677.1.S1_x_at--743--2511Chr03:29251892..29251916 (25 bp)
AACTCTGGTCCTCTTACCTACGATA
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--229--6491Chr03:29251913..29251937 (25 bp)
GATACCTGTCCTGCAGAACCTAAGA
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--458--6991Chr03:29251938..29251962 (25 bp)
GTACTGAAGATGTTGCTGCCGATGA
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--503--8231Chr03:29252056..29252080 (25 bp)
GGCAAAACTCCTTGCTGACCATGAG
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--472--2751Chr03:29252082..29252106 (25 bp)
AAGAACAAGTCCGTCAGCTGGCTGC
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--828--4711Chr03:29252098..29252122 (25 bp)
GCTGGCTGCGCTGATGATTGACAAA
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--737--7451Chr03:29252235..29252259 (25 bp)
GTGTCTTTTCTCACCGAAGTTGAAC
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--730--8631Chr03:29252344..29252368 (25 bp)
TGGGTTCATTGCCATCTAGGCCAAA
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--58--7351Chr03:29252377..29252401 (25 bp)
GTGCAGCCGGCAACAGATTACCAGC
LOC_Os03g51220
OsAffx.25677.1.S1_x_at--80--9991Chr03:29252395..29252419 (25 bp)
TACCAGCTGGATATGGAGGCCCCAT
LOC_Os03g51220
Target Sequence 
GTGAAAACTGTGAACTTCAACTCTGGTCCTCTTACCTACGATACCTGTCCTGCAGAACCTAAGAGTACTGAAGATGTTGC
TGCCGATGAAGAGAACAGCTCTAGAGTAACCGCCAACCTCACGGATTCCATAACTAGGCTGAAACGAGCAGCCGCTACAG
CTATTTCTGCAGCTGCTGTGAAGGCAAAACTCCTTGCTGACCATGAGGAAGAACAAGTCCGTCAGCTGGCTGCGCTGATG
ATTGACAAACTGTATCGGAAAGTAGAGGCGAAGGTGTCTTTTCTCACCGAAGTTGAACACCTGGTCCAGAGAACAAGAGA
ATACACTGAAAAGACTAGAAAGAAGCTTCTGATGGAGCGAAATGCGATAATCGCTGCCCGCATGGGTTCATTGCCATCTA
GGCCAAACCAGCCCGGTGCAGCCGGCAACAGATTACCAGCTGGATATGGAGGCCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25677.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis