Browse Element(s) Details


Os.51121.1.S1_x_at

Description gb:AK060978.1
DB_XREF= gi:32970996
TID=Os.51121.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F11, full insert sequence.
FL= gb:AK060978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5126011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51280NANA3+29292939..29296006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.47463.1.S1_x_at5/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.14491.2.S1_x_at4/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51121.1.S1_x_at--919--2771Chr03:29275322..29275346 (25 bp)
AAGAGTGTAGTTGTTTCGCTCAAGA
LOC_Os03g51260
Os.51121.1.S1_x_at--1078--531Chr03:29275366..29275390 (25 bp)
ATCCGAGATGACACCTACTGAGTTC
LOC_Os03g51260
Os.51121.1.S1_x_at--61--6071Chr03:29275385..29275409 (25 bp)
GAGTTCGTAGCATTCTCACTGGAGA
LOC_Os03g51260
Os.51121.1.S1_x_at--531--1131Chr03:29275412..29275436 (25 bp)
AGTCGCAGGGACTTGATTCACCAGC
LOC_Os03g51260
Os.51121.1.S1_x_at--966--1111Chr03:29275439..29275463 (25 bp)
AGTGATGTGTCCCACCAGGAATTTC
LOC_Os03g51260
Os.51121.1.S1_x_at--1031--2891Chr03:29275469..29275493 (25 bp)
AAGGTCTTGAGGTCTCTTCAGTCTG
LOC_Os03g51260
Os.51121.1.S1_x_at--183--3451Chr03:29275487..29275511 (25 bp)
CAGTCTGTGGCATCTGCTTTAATCC
LOC_Os03g51260
Os.51121.1.S1_x_at--886--9831Chr03:29275528..29275552 (25 bp)
TAAAGAGATGTTGGAGCCCCACCTC
LOC_Os03g51260
Os.51121.1.S1_x_at--219--131Chr03:29275667..29275691 (25 bp)
ATTCACCGCTAAACCAGGATCCATA
LOC_Os03g51260
Os.51121.1.S1_x_at--1098--2851Chr03:29275728..29275752 (25 bp)
AAGTGTTGAAGTCCGTCGAGGCTCC
LOC_Os03g51260
Os.51121.1.S1_x_at--836--911Chr03:29275746..29275770 (25 bp)
AGGCTCCCTGCCAATGTTCTGAGGT
LOC_Os03g51260
Target Sequence 
AAGAGTGTAGTTGTTTCGCTCAAGANGCTAATTACAGAGATCACATCCGAGATGACACCTACTGAGTTCGTAGCATTCTC
ACTGGAGACGAGTCGCAGGGACTTGATTCACCAGCTAAGTGATGTGTCCCACCAGGAATTTCGCNTGAAGGTCTTGAGGT
CTCTTCAGTCTGTGGCATCTGCTTTAATCCNCCTCCACATGCTGGATAAAGAGATGTTGGAGCCCCACCTCTCACGGCCA
ACACTCTTGGGGTGCAAAGATNATTCACCGCTAAACCAGGATCCATATTGGCCCCANTTTCAAGTTTTATCAGATGAGGA
ATTAAGTGTTGAAGTCCGTCGAGGCTCCCTGCCAATGTTCTGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51121.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis