Browse Element(s) Details


Os.49942.1.S2_at

Description gb:AK119408.1
DB_XREF= gi:37989031
TID=Os.49942.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F03, full insert sequence.
FL= gb:AK111312.1 gb:AK119408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g512701/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51280NANA3+29292939..29296006transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.47463.1.S1_x_at5/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51290Os.14491.2.S1_x_at4/113+29298810..29302507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g51310NANA3+29304065..29309694retrotransposon protein, putative, unclassified
LOC_Os03g51320NANA3+29310848..29314138retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49942.1.S2_at--407--4391Chr04:24113110..24113134 (25 bp)
GCCAATCTCAACCAAATACACCTTT
NONE
Os.49942.1.S2_at--723--331Chr04:24113095..24113119 (25 bp)
ATACACCTTTTTTGGCAGGACAATC
NONE
Os.49942.1.S2_at--137--5851Chr04:24113058..24113082 (25 bp)
GACCTTTACACCATGTATCTTGATG
NONE
Os.49942.1.S2_at--978--3811Chr04:24113004..24113028 (25 bp)
CTGCCATGACTTTGAATCCTGGTAT
NONE
Os.49942.1.S2_at--976--9771Chr04:24112972..24112996 (25 bp)
TAACCAACGGGTGTACATGCATATT
NONE
Os.49942.1.S2_at--493--411Chr04:24112832..24112856 (25 bp)
ATCAGTGTAGTTCTTGGTATCACAG
NONE
Os.49942.1.S2_at--974--6591Chr04:24112802..24112826 (25 bp)
GATTGTATCATGTGAACGCAGGTAC
NONE
Os.49942.1.S2_at--591--10311Chr04:24112763..24112787 (25 bp)
TTTCTGCTTCCTATACAAGTGGTAT
NONE
Os.49942.1.S2_at--936--892Chr04:24112647..24112671 (25 bp)
AGTCTAGCATACACAATAACCTGGT
NONE
Os.49942.1.S2_at--940--651NONE
ATGCACATTATTTGGTTGGCAATAG
NONE
Os.49942.1.S2_at--438--5911Chr04:24112571..24112595 (25 bp)
GAGCTCTGGCGAGACATCATTAGAC
NONE
Target Sequence 
GCCAATCTCAACCAAATACACCTTTTTTGGCAGGACAATCACTTATTTNTATGACCTTTACACCATGTATCTTGATGCAT
TTGTAGTATAGATATGGATGTAAATCCTGCCATGACTTTGAATCCTGGTATTTGAAAGTAACCAACGGGTGTACATGCAT
ATTTCATGATTTTTAAGATTGCTAATGCGATGAAGAATAGAAAAATGGAGGTTGAACCTTCTGAGTTAATGGCTTNTACA
ATTAGAAAAAGCCAAATGATGTAAGAACCAAATTTGTTATCAGTGTAGTTCTTGGTATCACAGAGAATGATTGTATCATG
TGAACGCAGGTACAAATTTGTTAGTCTTTTCTGCTTCCTATACAAGTGGTATATGTCAATATATGATTGTAGAAATATAT
ATGGAGAAANANATGTCTAGCTGCTAAGTGCTAANGNGCCTCTCATTTAAATTACTTCTCATTAGTCTAGCATACACAAT
AACCTGGTANTTTGGGNGACTTTATATGCACATTATTTGGTTGGCAATAGTTGACAGAATGAGCTCTGGCGAGACATCAT
TAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49942.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis