Browse Element(s) Details


OsAffx.25678.1.S1_at

Description tigr:9631.m05008
TID=OsAffx.25678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAP protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g512509/11cyclase-associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51280NANA3+29292939..29296006transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25678.1.S1_at--992--1451Chr03:29269018..29269042 (25 bp)
AGAAGTGGTGTTGTTAGCAGCAGCA
LOC_Os03g51250
OsAffx.25678.1.S1_at--214--8911Chr03:29268971..29268995 (25 bp)
TGAGAAGACCTCTCGTGCAGGGTCT
LOC_Os03g51250
OsAffx.25678.1.S1_at--805--7331Chr03:29268957..29268981 (25 bp)
GTGCAGGGTCTTTCTCCTTCAAGTC
LOC_Os03g51250
OsAffx.25678.1.S1_at--345--9231Chr03:29268943..29268967 (25 bp)
TCCTTCAAGTCTGGGCCTCCAAAAT
LOC_Os03g51250
OsAffx.25678.1.S1_at--448--7771NONE
GGTGCAATGCCAGAGACTGAAGTTC
NONE
OsAffx.25678.1.S1_at--753--9191NONE
TGCCAGAGACTGAAGTTCTTTAACT
NONE
OsAffx.25678.1.S1_at--98--1211Chr03:29267192..29267216 (25 bp)
AGTTCTTTAACTTGCAGGGTACAGC
LOC_Os03g51250
OsAffx.25678.1.S1_at--814--10491Chr03:29267186..29267210 (25 bp)
TTAACTTGCAGGGTACAGCACCAAC
LOC_Os03g51250
OsAffx.25678.1.S1_at--810--7691Chr03:29267176..29267200 (25 bp)
GGGTACAGCACCAACAATATCAATC
LOC_Os03g51250
OsAffx.25678.1.S1_at--648--2231Chr03:29267163..29267187 (25 bp)
ACAATATCAATCGACAACACATCTG
LOC_Os03g51250
OsAffx.25678.1.S1_at--998--7071Chr03:29267135..29267159 (25 bp)
GTCAATTGTACTTAAGCAATGATTC
LOC_Os03g51250
Target Sequence 
AGAAGTGGTGTTGTTAGCAGCAGCACTGCTGCTCCGGCTGCTGCTCCTGAGAAGACCTCTCGTGCAGGGTCTTTCTCCTT
CAAGTCTGGGCCTCCAAAATTGGAGCTTCAGATGGGGCGCAAATGGGTGGTCGAAAATCAAGTTGGTAAAAAGAACCTTG
CAATCGATGATTGTGATGCTAGACAATCTGTATATGTGTATGGATGCAAGGATTCTGTCCTTCAAGTAAATGGTAAAGTG
AACAATATCACTGTTGACAAATGCACCAAAGTTGGAATCGTTTTCAAGCATGTTGTAGCAGCTTTTGAAGTTGTCAATTG
CAATGGTGTTGAGGTGCAATGCCAGAGACTGAAGTTCTTTAACTTGCAGGGTACAGCACCAACAATATCAATCGACAACA
CATCTGGATGTCAATTGTACTTAAGCAATGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis