Browse Element(s) Details


Os.8114.1.A1_x_at

Description gb:AK099926.1
DB_XREF= gi:32985135
TID=Os.8114.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 23C4AG056
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N22, full insert sequence.
FL= gb:AK099926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5124011/11Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51190OsAffx.13455.1.S1_at11/113+29240248..29241724hypothetical protein
LOC_Os03g51200Os.51928.1.S1_at11/113+29242072..29242779Histone H2A, putative, expressed
LOC_Os03g51210Os.52912.1.S1_at11/113+29243116..29244651expressed protein
LOC_Os03g51220Os.17423.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51220OsAffx.25677.1.S1_x_at11/113+29249794..29252644Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g51230NANA3+29256658..29261890Swi2/Snf2-related protein DDM1, putative
LOC_Os03g51240Os.8114.1.A1_x_at11/113+29263297..29266366Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g51250Os.7617.1.S1_at10/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51250OsAffx.25678.1.S1_at9/113+29266372..29271332cyclase-associated protein, putative, expressed
LOC_Os03g51260Os.51121.1.S1_x_at11/113+29274436..29276866expressed protein
LOC_Os03g51264OsAffx.3573.1.S1_at11/113+29276075..29277289hypothetical protein
LOC_Os03g51270Os.37705.2.S1_x_at11/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.37705.1.S1_at10/113+29279565..29287121F-box domain containing protein, expressed
LOC_Os03g51270Os.49942.1.S2_at1/113+29279565..29287121F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8114.1.A1_x_at--517--8511Chr03:29265875..29265899 (25 bp)
TGGACACGTACCTGTTCGCCGTGTA
LOC_Os03g51240
Os.8114.1.A1_x_at--788--8791Chr03:29265887..29265911 (25 bp)
TGTTCGCCGTGTACGACGAGGACCT
LOC_Os03g51240
Os.8114.1.A1_x_at--224--9711Chr03:29265911..29265935 (25 bp)
TCAAGCCCGGGAAGCCGTCGGAGAA
LOC_Os03g51240
Os.8114.1.A1_x_at--946--3951Chr03:29265929..29265953 (25 bp)
CGGAGAAGTCGTTCGGGCTGTTCCA
LOC_Os03g51240
Os.8114.1.A1_x_at--135--7611Chr03:29266093..29266117 (25 bp)
GGGCAACAACCACAGGTGACTCCAT
LOC_Os03g51240
Os.8114.1.A1_x_at--230--1051Chr03:29266106..29266130 (25 bp)
AGGTGACTCCATTGCAGCCGGGCTC
LOC_Os03g51240
Os.8114.1.A1_x_at--856--4771Chr03:29266201..29266225 (25 bp)
GCTGCTGCTTGTAGTAGTCCTAGTG
LOC_Os03g51240
Os.8114.1.A1_x_at--275--10051Chr03:29266215..29266239 (25 bp)
TAGTCCTAGTGCAGCGGAATCGCCA
LOC_Os03g51240
Os.8114.1.A1_x_at--561--8211Chr03:29266230..29266254 (25 bp)
GGAATCGCCACGGACAATGTCAGTG
LOC_Os03g51240
Os.8114.1.A1_x_at--1050--51Chr03:29266264..29266288 (25 bp)
ATTGCAGGCGTGTTGTTAATGTACC
LOC_Os03g51240
Os.8114.1.A1_x_at--741--831Chr03:29266311..29266335 (25 bp)
ATGGATGCATTCTCTTGTACTCACA
LOC_Os03g51240
Target Sequence 
TGGACACGTACCTGTTCGCCGTGTACGACGAGGACCTCAAGCCCGGGAAGCCGTCGGAGAAGTCGTTCGGGCTGTTCCAG
ACCACCACCCTCGCCGAGACGTACCCGACGGGGCTGATGAGGAACGGCACCGCCGCCGGTCTGGCACCAGCCATGGCGCC
GGCGGCGGCGGCGCCGACCCTTCCGGTCAAGCCATCACCTGCTCCGGCGAGACTGCCGGGGCAACAACCACAGGTGACTC
CATTGCAGCCGGGCTCGGCGGCGGCGGCCGGGCCTTCAGCCCTGTGCGCGCCGGGGACGGCGACGACGACGGCGAGGGGA
GCAGCAGCTGCTGCTTGTAGTAGTCCTAGTGCAGCGGAATCGCCACGGACAATGTCAGTGATCAGCATAATTGCAGGCGT
GTTGTTAATGTACCTGTTAATCTGAGGGGCAGATGCATGGATGCATTCTCTTGTACTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8114.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis