Browse Element(s) Details


Os.20600.1.S1_x_at

Description gb:AK067604.1
DB_XREF= gi:32977622
TID=Os.20600.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112B07, full insert sequence.
FL= gb:AK067604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5109011/11F-box domain containing protein, expressed
LOC_Os11g373002/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51050Os.38367.1.S1_s_at11/113+29135580..29140934Peptide transporter PTR2, putative, expressed
LOC_Os03g51060NANA3+29141702..29142233Leucine-rich repeat receptor protein kinase EXS precursor, putative
LOC_Os03g51080Os.9438.1.S1_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51080Os.17946.1.A1_x_at11/113+29150783..29159315Glutamate decarboxylase, putative, expressed
LOC_Os03g51090Os.20600.1.S1_x_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51090Os.20600.1.S1_at11/113+29160523..29162777F-box domain containing protein, expressed
LOC_Os03g51100OsAffx.13453.1.S1_at10/113+29166962..29167964hypothetical protein
LOC_Os03g51110Os.49785.1.S1_at11/113+29186760..29188955Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20600.1.S1_x_at--447--2631Chr03:29162241..29162265 (25 bp)
AACCTGGATGGTCACGTGCTATTTC
LOC_Os03g51090
Os.20600.1.S1_x_at--78--831Chr03:29162248..29162272 (25 bp)
ATGGTCACGTGCTATTTCTTGGGCA
LOC_Os03g51090
Os.20600.1.S1_x_at--1052--10331Chr03:29162334..29162358 (25 bp)
TTTACTGATGACAACGATCTTTCGT
LOC_Os03g51090
Os.20600.1.S1_x_at--419--9271Chr03:29162456..29162480 (25 bp)
TCCTGCTCCTGTATGGATTACACCT
LOC_Os03g51090
Os.20600.1.S1_x_at--65--832Chr11:21526356..21526379 (24 bp)
ATGGATTACACCTAGTTTCACAAAG
LOC_Os11g37300
Os.20600.1.S1_x_at--622--5371Chr03:29162507..29162531 (25 bp)
GAAGAAGCACCTTTAAGGCTAGTTT
LOC_Os03g51090
Os.20600.1.S1_x_at--436--8771Chr03:29162645..29162670 (25 bp)
TGTTTTGTACCAACCTTTATATGTT
LOC_Os03g51090
Os.20600.1.S1_x_at--747--2251Chr03:29162676..29162700 (25 bp)
AAATTTCTGCTATGTGAAAGTCTAA
LOC_Os03g51090
Os.20600.1.S1_x_at--787--7091Chr03:29162695..29162719 (25 bp)
GTCTAAACAACAGGTCTTGTGCGGT
LOC_Os03g51090
Os.20600.1.S1_x_at--982--1011Chr03:29162706..29162730 (25 bp)
AGGTCTTGTGCGGTAGCCACTTGAG
LOC_Os03g51090
Os.20600.1.S1_x_at--130--3212Chr11:21526635..21526659 (25 bp)
CAAGGCTAATGTGACCAATGTTATT
LOC_Os11g37300
Target Sequence 
AACCTGGATGGTCACGTGCTATTTCTTGGGCATAACCAATCACTTTGTCTCAGCANNGAANAATATCCNNATCTCAAGGA
AAATTATACATATTTTACTGATGACAACGATCTTTCGTTATTTGGACNNCAAGAATAATCGTCGTGATATTGGATTATTT
GATTTGAAACATAACAGCAGGGAGGAACTTGTGTCTCCTCAGCTTTGGTCCAACTTTCCTGCTCCTGTATGGATTACACC
TAGTTTCACAAAGTTGAACTTNGCCTAGAAGAAGCACCTTTAAGGCTAGTTTTTTNTTTATGNATATTANAGTNGTGTAT
GTTTCTTCTTGTTCTGTGCNATTTATATGTAAAATTATGATTGGAGAACTAAAGTGTGAATGTGAAGGTTAAGTTGCTTC
ATATTTGTTTTGTACCAACCTTTATATGTTTATTTAAATTTCTGCTATGTGAAAGTCTAAACAACAGGTCTTGTGCGGTA
GCCACTTGAGGGGAATTAGTGAAATATACAAGGCTAATGTGACCAATGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20600.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis